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Information for unigene UN12904
| FASTA Sequence |
| Unigene ID: UN12904 | Length: 775 |
SSR | | GGAAACGAAGACTTTCTGGATAGAAAATTAGGGTTTTTTTCCCTTTCTCGCAAAGTCTTTGTCTGGATTGTTGCCGATCCAGCGAT
GGAAAGATCCGAATCCCCTCCACCGAAGCGTCAGAAGATGGAGGAAACAACGTGCTATAATGGCCGTCCAGAGGATTTTGATTCCG
ACGAGTGCTCCGACGAGGAGATGCAACTGTTCGAGCAAGAGTTGGATAAGATCGGCGGGGGTTATGAAATCGACTTCAAGAAATTT
CGTTACTGTTTTGGATGGAAAACCACTGGATCTGGATGACAGTACAATGGTTTATGAACCTGAAACTAACAGAGATTTCATAGGGA
AGTTGGCGAACCTGGCTCTTACCAAACATAACGCAGACCGGGGAACAAGCTTTGAACTGGGAAAGATTATGATTGCCAACTTTCAT
CTATCTTGTGGATTCTCCTTCTACATCTCATTCCAAGTCAATGATCCTTCAGAAGAAGATGGTAATCAGACAAAACCCTTTTCGAG
CAGTGGTTCGCTACTTTCCTGGAGATATTGAAGTTGTCTCTTGCAATCCAAAAGATTGAATTCTGTGTGTGTGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTTTTATAGCAATCCACCCGCTTGTTTCTGATATCATCACACATCTATCCT
ACCATCATTATCCTATCCTATCTATGAAACTGCTAGCTCTTTTCTTGTTTCTGTTTCCAACTTGTTTGCTTGGTGTGGTGTTTAAG
T
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002873189 hypothetical protein ARALYDRAFT_908406 [Arabidopsis lyrata subsp. lyrata] | 275 | 2e-022 |
| XP_002876181 hypothetical protein ARALYDRAFT_906686 [Arabidopsis lyrata subsp. lyrata] | 272 | 4e-022 |
| NP_196125 cystatin/monellin-related protein [Arabidopsis thaliana] | 186 | 4e-012 |
| NP_196123 cystatin/monellin-related protein [Arabidopsis thaliana] | 181 | 2e-011 |
| XP_002886425 predicted protein [Arabidopsis lyrata subsp. lyrata] | 168 | 5e-010 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FF68 Genomic DNA, chromosome 5, P1 clone:MUG13 | 186 | 3e-012 |
| Q9FF70 Genomic DNA, chromosome 5, P1 clone:MUG13 | 181 | 1e-011 |
| Q58FY9 Putative uncharacterized protein | 139 | 8e-007 |
| Q9CAM3 Putative uncharacterized protein F16M19.10 | 132 | 5e-006 |
| Q9CAM2 Putative uncharacterized protein F16M19.11 | 130 | 9e-006 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G05060.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05040.1); Has 40 Blast hits to 40 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 186 | 2e-014 |
| AT5G05040.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05060.1); Has 40 Blast hits to 40 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 181 | 7e-014 |
| AT1G63190.1 FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63200.1); Has 24 Blast hits to 24 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 141 | 3e-009 |
| AT2G37435.1 cysteine-type endopeptidase inhibitor | 139 | 5e-009 |
| AT1G63200.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63190.1); Has 34 Blast hits to 34 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 132 | 3e-008 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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