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Information for unigene UN12907
| FASTA Sequence |
| Unigene ID: UN12907 | Length: 1304 |
SSR | | GGATCGCCACAAAAAAAAGTCATCGTTCAACAACAGCAACATTCACTGTCTATCTTTGGTAGATCTTGTCTTCAACACACACCACC
ATCATCAGATAGATAGTCATGGCTAGGTCTGGGGTTGATGAGACATCAGAATCTGGAGCTTTTGTAAGAACAGCATCAACATTCCG
TAGCTTTGTCTCACAAGATCCTGCTTCTCTGTTCCCACCCGAATCCGGAAGATACCATCTTTACATTTCCTACGCTTGTCCATGGG
CTTGTAGATGTCTCTCTTTCTTGATGCTCAAAGGTCTTGACCAAGCTATCACCTTCTCGTCGTGTCACACAATTTGGGGAAGAACT
AAAGAAACTGATGACCATAGAGGATGGGTTTTCCCTGATTCAGACACTGAGCTCCCTGGAGCTGGGCCTGATTATCTTAATGGTGC
CAAGACTGTGAGAGACCTCTATGAGATTGCTAGTCCCAACTATGTGGGAAAGTACACTGTTCCTATTCTGTGGGATAAGAAGCTTA
AGACTGTGGTTAACAATGAGAGCTCAGAGATAATCAGGATGCTCAACACTGAGTTCAACGGCGTTGCGAAAAACCCGTCGCTCGAC
CTTTATCCTTCTCATCTTAGAGAAGCAATCGACGAGACTAATGAATGGGTTTTCAATGGGATAAACAATGGTGTTTATAGATGTGG
GTTTGCTAGGAAACAAGAACCTTACAATGAGGCAGTGAACCAAGTGTTTGAAGCAGTAGAGAGATGTGAGACAATACTCGAAAAAC
AACGATACATCTGTGGAGACACTTTTACTGAAGCAGATGTTCGGTTATTCGTCACCCTTATAAGATTTGATGAGGTTTACGCGGTT
CACTTCAAATGTAATAAGAGACTCTTAAGAGAGTATCCGAATATCTTCAACTACATAAAAGATGTATACCAAATCAATGGAATGAG
CAGTACTGTGAAAATGGATCACATCAAGCAACATTACTACGGAAGCCACCCTACGTTAAACCCGTTTGGGATCATCCCTCATGGAC
CAAACATCGATTACTCTTTGCCTCATGACCGCGACAGATACTCCTCCTGAAAAGACCAAACCTCAAAGGTCAATAATGTTTATCAC
CTGTCCTAGAAATAAAAAAAGCTTTCAAAAAACATGTCTCTTTGTATTTCAACTTTAAAGTCAATAATATACTTGTGTTTGTCTGT
GTGTGTGTGTTGCAACTCATGTTACATCTGAATTTTGCAAATTGATTGTATGTTTCGAGATTAGTTTTAAAGTCAATAATACTTGG
ATATGTTGCAAGTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_199315 putative glutathione S-transferase [Arabidopsis thaliana] | 1599 | 1e-175 |
| XP_002865303 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1591 | 1e-174 |
| AAK44087 unknown protein [Arabidopsis thaliana] | 1438 | 7e-157 |
| NP_193723 Intracellular chloride channel-like protein [Arabidopsis thaliana] | 1438 | 7e-157 |
| ABC75353 Intracellular chloride channel [Medicago truncatula] | 1364 | 2e-148 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P42620 Uncharacterized protein yqjG | 728 | 6e-076 |
| O94524 Glutathione S-transferase omega-like 2 | 615 | 8e-063 |
| P36156 Glutathione S-transferase omega-like 2 | 282 | 3e-024 |
| Q04806 Glutathione S-transferase omega-like 3 | 240 | 2e-019 |
| P48239 Glutathione S-transferase omega-like 1 | 215 | 2e-016 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FL95 AT5g45020/K21C13_21 | 1599 | 1e-175 |
| Q8H121 Putative uncharacterized protein At4g19880 | 1438 | 4e-157 |
| Q94K62 Putative uncharacterized protein At4g19880 (Fragment) | 1438 | 4e-157 |
| Q2MGR6 Intracellular chloride channel | 1364 | 2e-148 |
| C6TGS1 Putative uncharacterized protein | 1361 | 4e-148 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G45020.1 LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19880.1); Has 1632 Blast hits to 1632 proteins in 489 species: Archae - 12; Bacteria - 907; Metazoa - 22; Fungi - 156; Plants - 57; Viruses - 0; Other Eukaryotes - 478 (source: NCBI BLink). | 1600 | 4e-178 |
| AT4G19880.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45020.1); Has 1635 Blast hits to 1635 proteins in 489 species: Archae - 12; Bacteria - 905; Metazoa - 23; Fungi - 158; Plants - 57; Viruses - 0; Other Eukaryotes - 480 (source: NCBI BLink). | 1439 | 2e-159 |
| AT5G44990.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19880.1); Has 1632 Blast hits to 1632 proteins in 489 species: Archae - 12; Bacteria - 905; Metazoa - 23; Fungi - 156; Plants - 57; Viruses - 0; Other Eukaryotes - 479 (source: NCBI BLink). | 1253 | 7e-138 |
| AT5G44990.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19880.1); Has 1632 Blast hits to 1632 proteins in 489 species: Archae - 12; Bacteria - 905; Metazoa - 23; Fungi - 156; Plants - 57; Viruses - 0; Other Eukaryotes - 479 (source: NCBI BLink). | 1253 | 7e-138 |
| AT4G19880.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45020.1); Has 1621 Blast hits to 1621 proteins in 489 species: Archae - 12; Bacteria - 905; Metazoa - 23; Fungi - 155; Plants - 57; Viruses - 0; Other Eukaryotes - 469 (source: NCBI BLink). | 1078 | 1e-117 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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