Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN12921

FASTA Sequence
Unigene ID: UN12921Length: 1276 SSR 
AACTAAAAAAAAAAGTTAAAAGCGAGAAGAGAGGAAAGAAGTGCAGATTCATCATCATCAAACCCACAATCTTTTCTTATTAAATC
GTACGGATCTATCTATCTCCTAAAGATCATTCGTCTTCTTAATCTTTCTCGATCTGAGATTTCTACGTTTTCAATCGCTCTCTGCT
TGAAGGGATTGAAAGAAGATAACTTTGTTTTGTAGCCCCTGAAAAATAATGGCATCCGTGAGCATACCACCACCTCCTCCTCCTAT
AGACTCTACTGGTGGTGTTGATAAATTGCCCTTTGCAAAAGAAACGGTTTTCAGCTCACTTCTCCCAGATATGACTGTTCTGTCTC
CTCGGTTAATGCTACGAGGTGTAGAAGAAATGTGAGAGCTTTTGGTTTGGTTGATAAACTTGGGAAGAAGTCATGGAGAAAGAAAG
AAGAAAGCGACAGCGACGATGATGATGATGATGATGATGAGGATGAGGTGAAGAAAGATACCTCTGAGAAAAGATCAGCAACTCTG
GATGATCCAGAGGAGAGATGGGAATGGAGGAAGAAGATACGAGAGGTGATTGATAGCCACCCTGACGTCGAAGAGGAGGAGGAGAT
TGACATGGTGGAGAAGAGGAGGAAGATGCAGAAGCTTCTTGCGGATTACCCTCTTGTTGTCAACGAGGAGGATCCTGATTGGCCTG
AAGATGCTGATGGGCTGGGGGTTTAGCTTCAACCAGTTTTTTTTAATAAGATAACTATTAAGAATGAAAAGAAGGATGATGATGAT
GAAGAAGAAGATGATGATAGGGAGGAGGAGACTGTTTGGCAAGATGATAACTACATACGACCGATTAAAGATCTCACTACTGCGGA
GTGGGAGGAGGCAGTGTTCAAAGATATCAGTCCTCTCATGGTTCTTGTTCACAACCGCTACAAAAGGCCAAAGGAAAACGAAAAAT
TCAGGGAGGAGCTAGATAAGGCGATTCAGGTCACATGGAACTGTGGACTTCCTTCACCAAGATGTGTTGCTGTTGATGCTGTGGTT
GAGACAGATCTGGTTTCTGCTCTGCAAGTTACTGTGTTCCCAGAGATCATCTTCACTAAAGCTGGAAAGATATTGTACCGTGAGAA
AGGCATTAGAACAGATTCCTTCAGTCGATCTGTAAGTGTCGATTAAGCATAGGCCTTTTGTGATTATGTAAACTAGTTTCTTCCGA
AGTCTTGAGAACATGTATGAACTGATGAAGAAGTAGTCAAATCTTCTGAATTTGAAATATGATTTTTTTTAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002881198 hypothetical protein ARALYDRAFT_902219 [Arabidopsis lyrata subsp. lyrata]11402e-122
NP_180743 TRX fold-containing protein [Arabidopsis thaliana]11331e-121
AAO89195 hypothetical protein [Arabidopsis thaliana]11214e-120
XP_002309712 predicted protein [Populus trichocarpa]8705e-091
XP_002533350 conserved hypothetical protein [Ricinus communis]8355e-087

Swiss-Prot top hits (Blast detail)Scoree value
O94317 Uncharacterized serine-rich protein C215.131292e-006
Q54PH5 Pre-mRNA-splicing factor cwc21246e-006

TrEMBL top hits (Blast detail)Scoree value
Q9SKB6 Putative uncharacterized protein At2g3184011331e-121
Q84RF5 Putative uncharacterized protein At2g31840/F20M17.1211212e-120
B9HGB1 Predicted protein8703e-091
B9T531 Putative uncharacterized protein8354e-087
Q1PEX9 Putative uncharacterized protein8013e-083

Arabidopsis top hits (Blast detail)Scoree value
AT2G31840.1 LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28590.1); Has 865 Blast hits to 660 proteins in 98 species: Archae - 0; Bacteria - 14; Metazoa - 354; Fungi - 73; Plants - 57; Viruses - 25; Other Eukaryotes - 342 (source: NCBI BLink).11336e-124
AT4G28590.1 unknown protein2106e-017

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  100%

Unigene MembersMember information