RadishBase

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Information for unigene UN12930

FASTA Sequence

Unigene ID: UN12930	Length: 1683	SSR
AAACAAAGAAGGAACATATATTAATACAAACGATGTAAGTATATTATAGCACATCATAAACCAAACATAGGCGGCCAAAAGGACAA CGCGAAGACAAACATTGCAGTAGTAGCTGTCTTATAATATTTAACCTGTCAAATAAATTACACCCAATAATCATATAAATATAAAC ACACAAATCTCTCTTTCTTCTTTGTCTTCAAAAGGGAATATGGGGTTTTTACTCATGATATCCCCAGTTTCATCCCTGAGCTTGTG TTTTGTTGTCTCCATGACTTAACGAGACTCAATCCTTTCTCTGTGTTAATGCATTTAACTGATTCTCTACCTGCCCATTTCTCTGC TTCAATTTCTTTAATTCTTCTGTTAGGCTCAAAAAGCTCTGTTGCAGTAGCATAACTTGGGTCTGAAGTTCTTTCTCCCGTTGAGT TGCAGGCGGAGTCTGCAATAGCTCATCGACGCTTGTCTCTGGTGATCCAGGTTGCTGCTTGACAGAGGTTTGCTCCACGTGTTTTA TGAGTCTCAATATCTCTTCCCGTTGCATGGTGTTTTGCTGCAAAATGGACTGAACTGATGGGAGGATTGAGGCGGTCGTAAGGGAG CTCGGGCTGCTTGAACCACCGCTAAACGGTGTGAATGTAGAGTTTGTTGATCCCTTGGGACTCAGATCTGCTGATGTGACCTTAAA CCGTCCCTTGTGCTCCACATGCGGGGAATCTGACATCTCGTCCACAGTATCTCTCTTGGGACGATGCAATGATCCACTGTAGCTCC GCTCGCTCTGATATCTACGCAGTTGAAACTCCCTGTCAGCTTCCATTGAGATTCTTTTTGGAGAGAAGGTACTCTCTGGTATAAGT GAACCACTCGAATATTTTTTTGTTCAGAAATGAGATAACGTGGTAAAGAAGAGTTTTGTGCTGCACTGTCCTCTTCTTTCGTGGTG TGGGCCATAGATCCAATAGAAGAAGCCTTTGTTAAATGCTGTTGTCCAGAACTCATTTGGCTTGCATCTTTCCAATCAGGAGTGAT TGCATTATCCTCGTCCTCACCGACATCAAAGCACCCTTTGAGTGCTTGAAGAGGTTTGATTGGAAACGAGGCGAAAGAACTCTCCA AATCCTGTATGTCGTTTAATTCGTCATCATGACTGGGAGTTGTTTCTGAGCTGCTAGCCCTTTCAGGGGAAAGAGCAGATTCATCC TGCCTTTCACATTGCTTTCTGTTGAAATCAGGCTCTTCAGCATGTGAACTATCATCATCTGAAATAAGGGCAGCCTGACTCTTTAG GTCCTCGAGATTGAAATTCCAAGCGCTTATTCCCCTTATGTATTCTTGCTGTGATAAGTGTGCTTCGTACTCGGACTTGTTTTGCA TTAGAAGATCAGCTTCCTTTGACTTTATCGTTTGCTTAGGAGCTGACTTCTCCTGCTGATGATCTCCTCCAATCACGCAGAAAAAA ACAGAGGGAGACGTCGTCACCGCAGTCAATTGCGGCGGCGGTGGAGTTTGATAGATTTGGCGATCGATCTGCTAATTAATGAGACG AGAATTATTTGAAATTCGTAGCGCTAGAGAGAGGTTACAATCTCTCTCTCTCGCTTTCTCTGTCTTCGTTGTCGACTTCTTCTCCT CCTTGTGGATTGCTTTTTCTGGCGTCGGGTTTTCGCTTAGCAGAAAGCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002873687 kinase family protein [Arabidopsis lyrata subsp. lyrata]	833	1e-086
NP_196976 protein kinase family protein [Arabidopsis thaliana]	817	9e-085
AAL38867 putative protein kinase [Arabidopsis thaliana]	817	9e-085
CAC01871 protein kinase-like protein [Arabidopsis thaliana]	669	1e-067
ABS32235 protein kinase [Carica papaya]	488	1e-046

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
Q84WU5 Putative uncharacterized protein At5g14720	817	6e-085
Q8VYZ4 Putative uncharacterized protein At5g14720	817	6e-085
Q9LER4 Protein kinase-like protein	669	9e-068
A7L4B0 Protein kinase	488	9e-047
B9GHQ7 Predicted protein	459	2e-043

Arabidopsis top hits (Blast detail)	Score	e value
AT5G14720.1 protein kinase family protein	818	3e-087
AT1G79640.1 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	144	4e-009
AT4G10730.1 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	132	9e-008
AT4G24100.1 protein kinase family protein	121	2e-006

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


20	1			11%


12	2			22%


10	2			22%


6	3			33%


8	1			11%

Unigene Members	Member information