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Information for unigene UN12966

FASTA Sequence
Unigene ID: UN12966Length: 1388  SNP
GGGACGAACGCTTTTGTAACTAAAAAGCCAAAAGCAATATTGTCTCATTCACCAAAAGAACAATGCAACAGCACAAGAAAGCCCTC
TCAGTTCAATTCATCCACCAAATAAAATAAAATCCAAAGAGTTAATAACCAAACCAATTGTTTCAAAAGCTTTATGAAGAAGAAAA
TATGATTTGCCTGGGAAGTTTTTAGAATCGGACAACGTCTTGTAGGCAATCGAAGAAATGAGTGATCTTGATTTTCTCTCTCCCAG
CATAGATAGCTTCTGCGGATCCACCGTCTTCTCCTTGCGCCGCCATCTCTATTAGCATGTACAGCTTCTTGATTGGCATATCATCG
AGAGCCTCGGCAGCTGCATCGATATCATCCTCCGAGAAGACATTAAGCTGCTTCAGCACCTTCTTTGCATCCTCTGTTCTCAATGT
TGGAACAGAGTAAGTGATAGAGAAGGCATCACAGATACCAACAGAGTCTAAGAAGGTTAGTTGACTTGTTGTCCCAAACACGAGAA
GTTTCTTCCCCTTCGGAGGAAGTCGTTTGAGAAGAACCATTAACGTCTGAGAAATAATGTTTGAGAAACGAGGACCGATTGCTACG
TACTCCAACAATCTTTCGATATCATCAAGGATAATGATGCTCATTGGTGATTTATATGCATCCTCAAAGACCTTGACAATGTGAGC
ACATTTGGTGCTCTCCTGAAGACCAATCATAGTTTCAGCAGAGACGATCTTAACATAGGGGAAGTCACTATCGATACCAACAGTTG
CAGCTAAAGCAGTTTTTCCACTTCCACTTGGCCCCTCTAGAAGACAAGTGACAAGAGGACTTCTACTACTAACTTTAACTTGCTCG
ACTAGAAGCATCGCTCTTTTGTAAATGTGATTATGCCGATCACCAGAATCCACCATCCCGTTAAGTCTGCAGCGCTCCAGGTCATC
TGTGGAGGCTCCAAAGGCAGGCTGAACTTCATGGATTGCATGGAGAAAATCCTCCATAGTGATCTTGATATTCTCTTCTTCCACTG
GCTTTGTAAGATCATCCATGCTTAATTGTCTGTTTAACGCATATGAGGTAGCACTTTTAACAACACCTTCAAGCTCCGCACCACTG
TAATTTTTTGTTCGAGCAGCAAGCTCTTGGAGATTGATATCATGACCAAGGAAAGAATTTTCCTTCATCTTGTTTGTGTGAATCTG
AAGAATTTGGAAACGCCCAGCTTCATCAGGAAGGCTTATCTCAACTTGAACCTCCAATCTTCCCGGCCTTAAAAGAGCTTCATCAA
GCAAATCCTTTCTGTTTGTCATTCCAATAAGCAAAACATTGTTCAAGGCCTCCACACCATCTATCTTTGTCAAAAGCTGGTTCACA
ATACTATCATGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002874819 N-ethylmaleimide sensitive factor [Arabidopsis lyrata subsp. lyrata]19262e-213
CAB81033 putative component of vesicle-mediated transport [Arabidopsis thaliana]18562e-205
NP_192400 vesicle-fusing ATPase [Arabidopsis thaliana]18562e-205
XP_002329781 predicted protein [Populus trichocarpa]17972e-198
XP_002305796 predicted protein [Populus trichocarpa]17962e-198

Swiss-Prot top hits (Blast detail)Scoree value
Q9M0Y8 Vesicle-fusing ATPase18561e-206
Q75JI3 Vesicle-fusing ATPase9142e-097
P18708 Vesicle-fusing ATPase9043e-096
P46459 Vesicle-fusing ATPase9043e-096
P46460 Vesicle-fusing ATPase9043e-096

TrEMBL top hits (Blast detail)Scoree value
B9N3G0 Predicted protein17971e-198
B9H2U6 Predicted protein17962e-198
Q40495 N-ethylmaleimide sensitive fusion protein17405e-192
A5C0W8 Putative uncharacterized protein17324e-191
B8B005 Putative uncharacterized protein16455e-181

Arabidopsis top hits (Blast detail)Scoree value
AT4G04910.1 NSF (N-ethylmaleimide sensitive factor); ATP binding / binding / nucleoside-triphosphatase/ nucleotide binding18569e-208
AT3G09840.1 CDC48 (CELL DIVISION CYCLE 48); ATPase/ identical protein binding2331e-019
AT1G50250.1 FTSH1 (FtsH protease 1); ATP-dependent peptidase/ ATPase/ metallopeptidase2322e-019
AT5G42270.1 VAR1 (VARIEGATED 1); ATP-dependent peptidase/ ATPase/ metallopeptidase2312e-019
AT3G53230.1 cell division cycle protein 48, putative / CDC48, putative2242e-018

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
73  23%
 
63  23%
 
102  15%
 
123  23%
 
92  15%

Unigene MembersMember information