RadishBase

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Information for unigene UN12967

FASTA Sequence

Unigene ID: UN12967	Length: 836	SSR
CATATTTAAAATTTTCTATTTTTATATGATTTCATTCCCACATCATCCAGATAATACACTCTCTCATTGTTTCAACAATTAATATT TCAGCAAAATAAATCAAGTACAGCCCCTTTTAGACAATTAATTCAAACACACAAACAAAACAAAACATTACAAAAATAAAGAAAAT TGAACTGATTGGACATTTCTAACTTAAATGATTTCCCTGAAAAAGAATTTTAGGTTTTTGTTTTTGCAATTTGGATGTGATCCAAA AAAACTGTGAGATTGGTCACTTACCACATCCTTAACAGGGCAAACGGAATCATGAACTGAGCGAGACCTGTGACCACGGAGACTGA TCCAATGTTCTTGACAGGTGCAGATTTTGGTGGAGGAGGGAGCTTCTCTACTTTAACAGCGAGCTTCATGCCTCCGTAACATCCAC CCTTTCCGTCGAGCAGATAGTAGTGCTTGGTCACGTTGAGAGGGACAACGTCTCTCCCTGCTCCACGTGTCCAGTTTACGAGAGGA TGGTCGGAATTGCAGTTTTCGTAGTCGGTTTTGTTTACTTCGAGAATGTTGTGTTGGTTTCTGTCGAACACGAAATAGAGCCAGTC ACCGAGGTAGAAATGCTTTCCCTGAGCCCAGATGGTGTAGTTGATGTTTGGGTTCCAGAACTTGTTGTCACCGACGGTATACTTCT TCGCGGTCACTCCCGGCACTGGCATCACCACTACATAAGCCAGTACCACCGCAGCAATCAGCACCGTCAATCTCGCCATTTTTCTC TCTCTCTATTGACACTCTCTCTCTCTCTCTCTCTCTCTAGACTTGTGGGTTTAGTTGCGCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_197039 Lamin-like protein [Arabidopsis thaliana]	767	2e-079
AAN60271 unknown [Arabidopsis thaliana]	759	2e-078
XP_002873721 hypothetical protein ARALYDRAFT_909508 [Arabidopsis lyrata subsp. lyrata]	754	7e-078
ABL97976 lamin [Brassica rapa]	752	1e-077
CAA65749 lamin [Brassica oleracea]	628	3e-063

Swiss-Prot top hits (Blast detail)	Score	e value
Q39131 Lamin-like protein	767	9e-081
Q41001 Blue copper protein	177	2e-012
Q8LG89 Basic blue protein	160	2e-010
Q9T076 Early nodulin-like protein 2	145	1e-008

TrEMBL top hits (Blast detail)	Score	e value
A1YMX0 Lamin	752	8e-078
Q39370 Lamin	628	2e-063
C6SVN5 Putative uncharacterized protein	555	5e-055
Q8L9G8 Putative lamin	539	4e-053
Q9MAC1 At3g01070	539	4e-053

Arabidopsis top hits (Blast detail)	Score	e value
AT5G15350.1 plastocyanin-like domain-containing protein	767	9e-082
AT3G01070.1 plastocyanin-like domain-containing protein	543	8e-056
AT4G12880.1 plastocyanin-like domain-containing protein	537	4e-055
AT2G27035.1 plastocyanin-like domain-containing protein	285	7e-026
AT3G60270.1 uclacyanin, putative	182	6e-014

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	3			75%


9	1			25%

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