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Information for unigene UN12969

FASTA Sequence
Unigene ID: UN12969Length: 1050 SSR 
AGGTAATGTGGAAGGTGTGTCATTCTCAATAGAAAGCTTTATGAGTTTGCAAAAGCTAAAAACAAAAACGAATTCAAATTGTTTCT
CTTCTCTCATCAAACATTGTACATAAAATCTAAAACATATTTTTCCATTCTTTGCCTCTCTCTCTCTCTCTCTTCTGCCATAAGAT
TCTTCAACTCACCTCTGTTTAATCGAAGCAACGTGTGCGGCCTAATGAAACACGGATTGATGATAATAGCCTTACTGAAAGCAAAA
GGCAGCTGCTACTTTACCACCCAAATTTGCTTTTAATCAGTATGGTCTGTAGCGCATTGGCGTCTGAACCTGGGAACTCTCCCATA
ACCATAAGGAGCATAAAATGGAATTCCAGGCATGAATCCTCTCATGGGTCTAAAGGGACGCCTTCCTCGGAACTGTCTCATTCCAG
GGACGTTAGTTCTCTTTGCTGATACCTTTATCTGACGACCATGCAGCTCTGACTCGTTCAAGATAAGAGAATTCTGAACGGCATCT
TCTTCCACGAATTCGACGTACGCAAAACCTTTGGGTTGGCCAAACTTATCTGTCAGAATCGTAACCCTGTTGACAGTCCCACAGGA
CTGGAAATGTTGCTGGACTTCCTCTGGGGTACATGCGTAGTCCACATTGCCAACATAGATTGAACGGGAATCAACTTCCTCCTTCT
CAGCAGAACTAATAGCACCTGATGGATCTTGATCAGCGCCCATTTCTTTCTCAGCTTTGGCTTGCATTTCACGCAAAGCTCCAGCT
TCTTCCTCGATCTCCTTGATTCGCTTCTTCATACCCTCCAGATCCTTAGAGCTAGAGCCTGGCTCAAGCTCCTCGTCTCCTCCTCC
GGCGGCGGCGCCTTCTTCTTCGCCGACGTGTTCCTCGTACTCGTCCGTCTCCATCTCTCCTTCCTCCTCTGGGATCTCTCCACCGT
ACACCTCGTGCTCTTGCTCATCGTTAAGCGTCATCTCTCTCTCTCTATCTCCCTCTTCTCTCACTCGGCGACTGTCGTTAATCGAG
AAATCTTAGGGCTTGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002864097 hypothetical protein ARALYDRAFT_918145 [Arabidopsis lyrata subsp. lyrata]10139e-108
NP_568751 polyadenylate-binding protein 1 [Arabidopsis thaliana]10093e-107
AAM61036 contains similarity to poly(A)-binding protein II [Arabidopsis thaliana]10066e-107
BAA97374 unnamed protein product [Arabidopsis thaliana]9734e-103
AEN74948 poly(A)-binding protein 1 [Citrus sinensis]8302e-086

Swiss-Prot top hits (Blast detail)Scoree value
Q9DDY9 Polyadenylate-binding protein 2-A3952e-037
Q7ZXB8 Polyadenylate-binding protein 2-B3942e-037
Q6NVP7 Polyadenylate-binding protein 23907e-037
Q86U42 Polyadenylate-binding protein 23853e-036
Q28165 Polyadenylate-binding protein 23843e-036

TrEMBL top hits (Blast detail)Scoree value
Q93VI4 AT5g51120/MWD22_610092e-107
Q8LG48 Contains similarity to poly(A)-binding protein II10064e-107
Q9LU62 Similarity to poly(A)-binding protein II9733e-103
B9RA16 Polyadenylate-binding protein, putative7601e-078
C6T4N1 Putative uncharacterized protein7313e-075

Arabidopsis top hits (Blast detail)Scoree value
AT5G51120.1 PABN1 (POLYADENYLATE-BINDING PROTEIN 1); RNA binding / poly(A) binding / protein binding10134e-110
AT5G65260.1 polyadenylate-binding protein family protein / PABP family protein6343e-066
AT5G10350.1 polyadenylate-binding protein family protein / PABP family protein6263e-065
AT5G10350.2 polyadenylate-binding protein family protein / PABP family protein5968e-062
AT2G16940.1 RNA recognition motif (RRM)-containing protein1325e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
64  100%

Unigene MembersMember information