 |
Information for unigene UN13035
| FASTA Sequence |
| Unigene ID: UN13035 | Length: 1028 |
| SNP | GGGATCATTTGAAAAATATCCTTATTTATAGTTCAAAAAAAGGCAATAACATGCAGGAATAACGTAACAACACATTCTGTAAAAAC
ATTTCGTGTTCACATGCGTTGTTTCTCAACCCAATCAAGCCTACAAAATCATGTGTTTCATCGGATATATGAATTCAAAACCGTAT
TTCATTCATCATTTGCTGCTATCTGTGAAGTCAGCGTCAATCACATCATCACCATCTTTCCCGGTTGAATCTGCTGATGAAGCATC
TTCGCCTCCAGGGGAAGGACCTGCACCTGCTGCTCCTGCTCCAGGCTGGTTGTACATCGACTGACCAATCTGCATCACTTCTTGGT
TAAGAGCAGCCATCGTGTCCTTGATCTCTTGAGTAGTTCCACTTGCAATCTTGTCTTTCAGCTCTTGTAGCTTGGCCTCCACCTTC
TCTTTCACTTCACCTGGAATCTTCTCACCGAGTTCTTTGAGTTGCTTCTCTGTCTGGTACACCACTGAATCCGCCTGGTTCTTCGT
GTCAATTGCGTCTCTCTTCTCCTTGTCGTCCTTTGCAAACCTTTCTGCTTCTTGGACCATTTGCTCTACCTCGTCCTTGGGCAATG
TACTGGCACCAGTAATGGTGATGTCTTGTTTCTTTCCGGTGCCTTTGTCACTAGCACTGACGGATAGAATTCCATTGGCGTCGATG
TCAAATTTGACTTCGATCTGTGGAACTCCACGTGGTGCTGGTGGGATGCCATCTAGCCGGAAGCTGCCAAGAGACTTGTTATCCCG
GACAAACTCCCTCTCACCCTGCAACACATTAATCTCAACACTTGTCTGTCCATCAGCAGCAGTGGAGAAGACTTCCGACTTGGAAG
TAGGCAGAGTTGAGTTCCTTGGAATAATCTTGGTCATAACACCGCCAAGTGTTTCTAAACCAATGGATAGGGGTGTCACGTCAAGA
AGGACAATGTCGCTCACATCTCCAGCTAGAACACCAGCCTGTAATCAAAATAAAATGATTTGATAACTCACTGCAGCTAAAC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002869727 cphsc70-1 [Arabidopsis lyrata subsp. lyrata] | 1259 | 3e-136 |
| NP_194159 chloroplast heat shock protein 70-1 [Arabidopsis thaliana] | 1253 | 1e-135 |
| XP_002864020 cphsc70-2 [Arabidopsis lyrata subsp. lyrata] | 1179 | 5e-127 |
| NP_199802 heat shock protein 70-2 [Arabidopsis thaliana] | 1178 | 6e-127 |
| AAF27639 heat shock protein 70 [Arabidopsis thaliana] | 1174 | 2e-126 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q02028 Stromal 70 kDa heat shock-related protein, chloroplastic | 1123 | 7e-122 |
| Q08080 Stromal 70 kDa heat shock-related protein, chloroplastic (Fragment) | 1051 | 2e-113 |
| Q8YW74 Chaperone protein dnaK2 | 839 | 6e-089 |
| P22358 Chaperone protein dnaK2 | 823 | 4e-087 |
| Q7U3C4 Chaperone protein dnaK2 | 820 | 9e-087 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9STW6 Hsp 70-like protein | 1253 | 9e-136 |
| Q9LTX9 Heat shock protein 70 | 1178 | 4e-127 |
| Q9M637 Heat shock protein 70 | 1174 | 1e-126 |
| B9SKC7 Heat shock protein, putative | 1147 | 2e-123 |
| B9N758 Predicted protein | 1142 | 7e-123 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G24280.1 cpHsc70-1 (chloroplast heat shock protein 70-1); ATP binding | 1253 | 5e-138 |
| AT5G49910.1 CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2); ATP binding / unfolded protein binding | 1178 | 3e-129 |
| AT5G09590.1 MTHSC70-2 (MITOCHONDRIAL HSP70 2); ATP binding | 688 | 2e-072 |
| AT4G37910.1 mtHsc70-1 (mitochondrial heat shock protein 70-1); ATP binding | 666 | 6e-070 |
| AT5G02490.1 heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) | 565 | 3e-058 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
