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Information for unigene UN13045
| FASTA Sequence |
| Unigene ID: UN13045 | Length: 964 |
| SNP | GGGCATCTCTCTCTTTCCCTGTTTCTGAGATTTTCTTCGGCTTTTTTTTCCCCTGTCTGTCCGTCTGTATCTTTGTCATTCTTATC
GCAGATCTCGAGGAAAGTTTACGCAATCGATTCAAAGTTTGTGTTTGTTTGATTGATTGTTTTTTTTGCGATGGGTACGTCGTCGG
GGCAAGCAGAATTTGATTACTTGTTCAAAGTGTTGTTGATCGGAGATTCTGGTGTTGGGAAAAGCTCTCTCTTGTTGAGTTTCACA
TCTAATACCTTTGATGATCTGTCTCCCACTATAGGTGTGGATTTTAAGGTTAAGTATCTTACCATTGGAGACAAGAAACTCAAGCT
TGCCATTTGGGATACAGCTGGGCAAGAGAGGTTTAGGACGCTAACAAGTTCATATTACAGAGGAGCTCAGGGCATTATAATGGTGT
ATGATGTGACACGACGAGACACATTCACAAATCTATCAGATATATGGGCCAAGGAAATCGACCTTTACTCGACTAATCAGGATTGC
ATCAAGATGCTTGTTGGCAATAAAGTCGACAAGGAGAGTGAAAGAGCTGTCTCTAAAAAAGAAGGCATAGACTTTGCTCGGCAGTA
CGGATGTTTGTTTCTCGAGTGTAGTGCAAAGACTCGTGTCAACGTTGAGCAATGTTTCGAAGAGCTTGTTCTTAAGATTTTGGAAA
CGCCTAGTCTTACTGCTGAAGGTTCGTCTGGAGGGAAGAAGAACATCTTCAAACAGAACCCAGCACAAACAAGCAGTGCTTCATCG
AGCTACTGCTGCTCTTTTTAGACATGGCTTTACGGTTTATTACGCAAAGTACACTCTTGTTTGTCTTCTTGTTCTCGGTTTCTCTT
TTTCCCAAAAATACTGCAGCATCTTGGATGTAAAAATCTTAACCCTGATTTCAAAGTTGTGTTCCCTGTTTTTACTTGATCAAAGG
CTAAAAAAATAACTGATT
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002893966 hypothetical protein ARALYDRAFT_473785 [Arabidopsis lyrata subsp. lyrata] | 1066 | 6e-114 |
| NP_175056 Ras-related protein Rab-18 [Arabidopsis thaliana] | 1059 | 4e-113 |
| XP_002520256 protein phosphatase 2c, putative [Ricinus communis] | 948 | 3e-100 |
| XP_002520255 protein with unknown function [Ricinus communis] | 942 | 1e-099 |
| ACU23007 unknown [Glycine max] | 941 | 2e-099 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P36862 GTP-binding protein yptV3 | 584 | 2e-059 |
| Q5ZLG1 Ras-related protein Rab-18 | 544 | 8e-055 |
| Q0IIG8 Ras-related protein Rab-18 | 540 | 2e-054 |
| Q9NP72 Ras-related protein Rab-18 | 540 | 2e-054 |
| Q5R5H5 Ras-related protein Rab-18 | 540 | 2e-054 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O23657 AtRab18 | 1059 | 3e-113 |
| B9S2N7 Protein phosphatase 2c, putative | 948 | 2e-100 |
| B9S2N6 Putative uncharacterized protein | 942 | 9e-100 |
| C6TJB7 Putative uncharacterized protein | 941 | 1e-099 |
| C6SWE3 Putative uncharacterized protein | 933 | 1e-098 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G43890.1 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding | 1059 | 1e-115 |
| AT1G43890.2 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding | 1059 | 1e-115 |
| AT1G43890.3 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding | 1059 | 1e-115 |
| AT5G03530.1 RABC2A (RAB GTPASE HOMOLOG C2A); GTP binding / GTP-dependent protein binding / myosin XI tail binding | 800 | 2e-085 |
| AT3G09910.1 ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B); ATP binding / GTP binding / transcription factor binding | 715 | 1e-075 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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