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Information for unigene UN13085
| FASTA Sequence |
| Unigene ID: UN13085 | Length: 849 |
| SNP | GGATCCATCTTACATATATATTACTCGTCATCAGGAATTCATGTTTTCTCTCTGACAAGAGAACTCAGAGTAAGTAAGAATGGTAC
AGACGAAGAAGTTCAGAGGTGTCAGGCAACGCCATTGGGGTTCTTGGGTCGCTGAGATTCGCCATCCTCTCTTGAAACGGAGAATT
TGGCTTGGGACGTTTGAGACGGCAGAGGAGGCAGCAAGAGCCTACGACGAGGCGGCTGTTTTAATGAGCGGCCGCAACGCCAAGAC
TAACTTCCCCCTCAACAACAACAACACAGGAGACACATCGGAGGGCAAAACAGATATTTCATCCTCCTCTTCATCACTTTCTTCTA
TCCTCAGCGCCAAACTGAGGAAATGCTGCAAGTCTCCTTCGCCTTCCCTCACCTGCCTCCGTCTTGACACAGCCAGCTCCCACATC
GGCGTCTGGCAGAAGCGAGCCGGTTCCAAGTCCGACTCCAGTTGGGTCATGACGGTGGAGCTAGGTCCCGCTGGCTCCTCCCAAGA
GCCTACTAAAAATGCTTCGCAAGACGATGTTGGTCCGGCCACTGAAGTTGGCGGCGGCGGAGGAGGAGAAGAAGGAGCAATGGACG
AAGAAGAGAAAGCTGCTTTGCAAATGATAGAGGAGCTTCTCAATACAAACTAAATATTATTTGCCTATATATACCTATTTTTATTG
CTGATTTACCGCCATAATTATTAATTATACCCATATATATGCCATGTATCGTGTTTATATTTATATGTGATAGTTATAAGTTGTTT
TATATTTCGTTTTATGTCCAATAAAGTATTAGTATTTGTAACTACAATCCAGAAGTGAACTTTTTCTTTTGTGAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABB55256 AP2 transcription factor [Brassica juncea] | 863 | 2e-090 |
| XP_002890099 hypothetical protein ARALYDRAFT_471733 [Arabidopsis lyrata subsp. lyrata] | 849 | 7e-089 |
| ABB55257 AP2 transcription factor [Brassica carinata] | 842 | 4e-088 |
| XP_002517624 DNA binding protein, putative [Ricinus communis] | 652 | 5e-066 |
| NP_001148685 ethylene responsive element [Zea mays] | 638 | 2e-064 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LFN7 Ethylene-responsive transcription factor SHINE 2 | 537 | 4e-054 |
| Q3E958 Ethylene-responsive transcription factor SHINE 3 | 488 | 2e-048 |
| Q9XI33 Ethylene-responsive transcription factor WIN1 | 449 | 7e-044 |
| Q94AW5 Ethylene-responsive transcription factor ERF003 | 280 | 3e-024 |
| P16146 Protein PPLZ02 | 253 | 4e-021 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A1X3G8 AP2 transcription factor | 863 | 1e-090 |
| A1X3G9 AP2 transcription factor | 842 | 3e-088 |
| B9RV55 DNA binding protein, putative | 652 | 3e-066 |
| B6T5Z6 Ethylene responsive element | 638 | 1e-064 |
| C5XXV9 Putative uncharacterized protein Sb04g006970 | 626 | 3e-063 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G11190.1 SHN3 (shine3); DNA binding / transcription factor | 537 | 4e-055 |
| AT5G25390.2 SHN2 (shine2); DNA binding / transcription factor | 488 | 2e-049 |
| AT1G15360.1 SHN1 (SHINE 1); DNA binding / sequence-specific DNA binding / transcription factor | 450 | 5e-045 |
| AT5G25190.1 ethylene-responsive element-binding protein, putative | 280 | 3e-025 |
| AT1G78080.1 RAP2.4 (related to AP2 4); DNA binding / transcription factor | 232 | 1e-019 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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