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Information for unigene UN13105
| FASTA Sequence |
| Unigene ID: UN13105 | Length: 1198 |
SSR | SNP | CAGAGGTGAAAAGACTTAAATTAGACTGTTAAACAGAGGAGCATTCATTATGAAGAGACCACAAAATAGAGAGAAACCCGAATCAA
ACCAAAGCTAAGTAGTCAATGGCAGAACACAGACAGTCGAGAACATGTTCTTCACTCATAACCTTTACTTAATACGTTTCTAATAA
AAAGACCACTCGTGCATCCATTGCATAACAAACATAGGTGAAGAGCTTAGTACGGTCCAAAACAGCCATCCTCTCACATAACTCTA
TATTCTTCGAAGCGCCCTCCAGAAAGTGCGTTTAATGAGAATAGGAAGGGTGGTGATCAAAACTGGCGCCTTGGAGGCCTAGCCTC
AGCTTCAGAGACTCTGATTTGTCTACCGTCCAAATCGGCACCATTCAAGTTTCTGATGGCATTTTGGACCTCTTGAGCAGAGTTGT
ATGTCACAAACCCAAAACCCTTAGATCGACCACTGTCCCTGTCGTAGATGACTCTAGCCTCAGCTACTTTTCCCTGCTCCCCGAAC
AAACTCTCGAGAGCCATGTCATCGACTCCCCAAGATAGGTTGCCGACGTAAACACGGTTTCCTGAACCACCACCACCACCACCACC
ATATCCAGAACCGGAGCTTCCAAAGCTGCTTCTGGGTCCTCTGGAGAAGGAGTCTTCCCTCTTCGGTGGAGGAGGACCCGCATTAA
CTCTCAAGGCTCTACCATCTAACTCATAGCCATTGAACTGCTGCTCAGCTGCTTCAACTTCAGACACTGAAGACATAGTCACGAAC
CCAAAACCTCTGCTTCTTCCTGTCACTTTGTCATATATCACCTCAACCATCTCGACATTTCCGGCGCCCTCGAAGAGCTGAGCGAG
CTGAGCACTGTCGACGTCGAAGGGGAGGTTACCGACGAAGAGTTTGAGGTCAGCAGAGAAGGATTGCTCCTGCTGCGGAGGAGCGT
CATCGGAGAAAACTCCGTCTTCTTCTTCTACGCTGAAGTCATCTGTGACGGCGACGTTGCGGACGAAGCGAGACGCGGCGGAGACG
GAGAGGGAAATGGATTGGGAGTTGAGTTTGAAGGAGAGGGAAGGAGGGAGGAAGGGAGTGGAGGCGGGTCTGGAGATGGAGAAAGG
AAGGGATTTAGGGTTGAAGGTGGAGAGAGCGAGAGACGAAGCTGAAGCAGCCATGGAGGAAGAGATAGGGTTGAGAGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002881497 hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp. lyrata] | 1235 | 2e-133 |
| AAM66970 putative RNA-binding protein [Arabidopsis thaliana] | 1216 | 3e-131 |
| NP_181259 ribonucleoprotein [Arabidopsis thaliana] | 1212 | 9e-131 |
| XP_002281642 PREDICTED: hypothetical protein [Vitis vinifera] | 861 | 5e-090 |
| XP_002519525 ribonucleoprotein, chloroplast, putative [Ricinus communis] | 843 | 6e-088 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9ZUU4 Ribonucleoprotein At2g37220, chloroplastic | 1212 | 4e-132 |
| P49313 30 kDa ribonucleoprotein, chloroplastic | 807 | 4e-085 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 771 | 5e-081 |
| Q08937 29 kDa ribonucleoprotein B, chloroplastic | 761 | 8e-080 |
| P49314 31 kDa ribonucleoprotein, chloroplastic | 758 | 2e-079 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L941 Putative RNA-binding protein | 1216 | 2e-131 |
| Q7GA50 Putative RNA-binding protein | 1212 | 6e-131 |
| B9S0K6 Ribonucleoprotein, chloroplast, putative | 859 | 5e-090 |
| Q8W214 Single-stranded DNA binding protein | 817 | 4e-085 |
| B9MTC6 Predicted protein | 812 | 2e-084 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 1213 | 3e-133 |
| AT3G53460.1 CP29; RNA binding / poly(U) binding | 560 | 1e-057 |
| AT3G53460.2 CP29; RNA binding / poly(U) binding | 560 | 1e-057 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 282 | 2e-025 |
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 272 | 4e-024 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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