RadishBase

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Information for unigene UN13159

FASTA Sequence

Unigene ID: UN13159	Length: 996		SNP
GGGGAACCCCACTGTCTGAAAAGAAAAGAAAAAAAAACATAAAAAGGGAGATTTAACCACATCTCCCATTTTTATTCTTCATCATC GCTTTGATCGTCACACTAAGATTTCACTTGTGTTTCTTCTGTGGAAGATCAGATCTTGGACAATCTCCAGTTCAAAGCGAGGAGGA GAAGTAGGAAGTAAAGGCAAAAGGGGGTTGAAGGATGTCGTCATTCACAGGAACTCAACAGAAGTGCAAGGCTTGCGAGAAGACGG TCTACCCTGTGGAGCTTCTCTCAGCTGATGGTGTTAGCTACCACAAGTCCTGCTTCAAATGCTCTCACTGCAAATCCAGGCTTCAG CTGAGTAGATATTCATCGATGGAAGGTGTGTTGTACTGTAAGCCTCATTATGAGCAGCTCTTCAAGGAGTCTGGTAGCTTCACCAA GAACTTTCAGTCACCTGCAAAACCAGCTGAGAAATCAAGTCCTGAGCTGACAAGGACTCCTAGCCGAGTTGCTGGTATGTTCTCTG GTACACAAGAAAAATGTGCCACTTGCAGTAAAACTGTGTATCCTATCGAAAAGGTAACAGTGGAGAGCCAGACGTATCACAAGTCC TGCTTCAAATGCTCACATGGAGGCTGCCCAATTTCGCCTTCAAACTACGCAGCTCTTGAAGGAATCTTGTACTGCAAGCACCATTT CGCTCAGCTTTTCAAGGAGAAGGGTAGCTACAACCACTTGATCAAATCCGCTTCCATCAAACGCTCTGCAGCCGCGGCAGTAGCCG CTGGTACACCAGCAACAGCGGTTCCTGAATCTTAAATTCAAGAATCATCTCCTCTCTCTAGTGACCTAAACTGAAGCTACTGCCAA ACCGATTAAGTTTGTTTTCTCTTTGTGTGTGAGTGTGTGTTCTTTGGTTCCATTGATGTCTCCTGAAGTCTTTGTGTTGTTATCTA TAAAAAAAAGTCTGATACATTCCTTTTGGAAAACATCAGTTTCAGTACGA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_191136 GATA type zinc finger transcription factor-like protein [Arabidopsis thaliana]	994	1e-105
XP_002876333 LIM domain-containing protein [Arabidopsis lyrata subsp. lyrata]	989	5e-105
BAH20111 AT3G55770 [Arabidopsis thaliana]	987	9e-105
ACU23614 unknown [Glycine max]	893	7e-094
XP_002279954 PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]	873	1e-091

Swiss-Prot top hits (Blast detail)	Score	e value
P29675 Pollen-specific protein SF3	551	1e-055
Q4U4S6 Xin actin-binding repeat-containing protein 2	238	3e-019
Q4KM31 LIM domain-containing protein 2	223	1e-017
Q1LZA7 LIM domain-containing protein 2	220	3e-017
Q9BT23 LIM domain-containing protein 2	220	3e-017

TrEMBL top hits (Blast detail)	Score	e value
Q9M047 AT3G55770 protein	994	9e-106
B9DH94 AT3G55770 protein	987	6e-105
O04193 At2g39900/T28M21.6	945	4e-100
C6TL24 Putative uncharacterized protein	893	5e-094
A5BSA7 Putative uncharacterized protein	873	1e-091

Arabidopsis top hits (Blast detail)	Score	e value
AT3G55770.1 LIM domain-containing protein	995	4e-108
AT3G55770.2 LIM domain-containing protein	995	4e-108
AT3G55770.3 LIM domain-containing protein	995	4e-108
AT3G55770.4 LIM domain-containing protein	995	4e-108
AT3G55770.5 LIM domain-containing protein	995	4e-108

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	1			10%


11	4			40%


8	1			10%


9	4			40%

Unigene Members	Member information