RadishBase

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Information for unigene UN13190

FASTA Sequence

Unigene ID: UN13190	Length: 1205		SNP
GGCAGTTGGGTGAGTGGGCTGTTCAAATCTTTTACTTCTCTCTTCCGCAAATTAATATTCTCTCCCCCTCTCAGACTCCCTTCCTT CCTTCCTTCCGCCGCCGACAATGCAGCACCAGACGAGAAGTGTTAAAGTGGAGAATGTATCAGATCTGGCAACGGAGAGAGAGATT CACGAGTTTTTCTCCTTCTCCGGCGACATAGACCACATCCACATCCTTAAAGATGCTTCCGAGCAATCAAGAGTCGCTTTTGTTAC CTTTACTGAACCTAAAGCCCTTGAAATCGCTCTCTTATTATCGGGTGCCACAATTGTAGACAAGATCGTTACTATAACTCCAGCTG ACAACTATGTTCCTAGGCGTGAGATCATGCAGCAAGTGGTAGAGAACGCGATGCCAGCAACACCAACACGCCAGAACAATGATGGC AATGGTGGTAGAGCGTACGTTAGCAAAGCGCAAGATGTGATGGCTACTGTTTTGGCCAAAGGCTCTGCTCTTGGACAAGATGCTGT GAACAAAGCCAAGGCTTTTGATGAGTTGCACCAGATAAGAGCCAATGCTTCCGCCAGAGTTTCTTCTTTTGACAAGAGAGTCAGGC TTAGCGAGAAGTTCAACGTGGGTATCTCTGTGGTTAACGAGAAAGTAAAATCCGTTGACCAGAGGCTTCAGGTTTCCGATAAAACC ATGGCCGCTATATTTGCAGCTGAGAAGAAGTTAAACGACACTGGTTCAGCTGTCAAATCAAGCAGGTATGTGACTGCTGGAGCTGC TTGGTTTAGTGGCGCTTTCAGCAAAGTTGCGAGAGCAGGTCAGCTTGCTGGCTCGAAAACCAAAGAGAAGTTCAATCTAGCCGTCT CCAACATAGCTTCCAAGGATACACCGATTGCTGTATAATAAGAAGTCGGAAGGGAGTAAAAAGCGTCGAAGTGAGGATCAATGAGT AGCTCCTAAGAGCTATTATATGATGGCCTTGTGTGAACAAATTTTGTGTGATAAATAGCATATGCCTATTCTTTTTAGTGTTCATT ATATTCTGCATTGTTCCCTTAATTCACTTCATGTTTTTGCATCAGTGTAAGTGTTTTCGAATTCACGTTGGGTGTGTGTTTGTATT GTGTTTCCATGAAAGACGCTAGAACTGCATTAAAATGTGAACGACTTGACGTTCAGCTAAATTAAAACTTAAACTTCATGTAAATT G

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_568522 RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]	1016	5e-108
XP_002868391 RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata]	1013	1e-107
ABD28433 RNA-binding region RNP-1 (RNA recognition motif) [Medicago truncatula]	875	1e-091
CBI39061 unnamed protein product [Vitis vinifera]	871	3e-091
BAJ88796 predicted protein [Hordeum vulgare subsp. vulgare]	801	4e-083

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
Q8L9M9 Putative RRM-containing protein	1016	3e-108
Q2HVL4 RNA-binding region RNP-1 (RNA recognition motif)	875	8e-092
B7FJ41 Putative uncharacterized protein (Fragment)	690	2e-070
B9SIA2 Nucleic acid binding protein, putative	606	1e-060
B9IPS4 Predicted protein	597	1e-059

Arabidopsis top hits (Blast detail)	Score	e value
AT5G32450.1 RNA recognition motif (RRM)-containing protein	1017	1e-110
AT5G46870.1 RNA recognition motif (RRM)-containing protein	527	1e-053
AT4G17720.1 RNA recognition motif (RRM)-containing protein	526	1e-053
AT5G16840.1 BPA1 (BINDINGPARTNEROFACD11 1); nucleic acid binding / nucleotide binding / oxidoreductase	360	2e-034
AT5G16840.2 BPA1 (BINDINGPARTNEROFACD11 1); nucleic acid binding / nucleotide binding / oxidoreductase	360	2e-034

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	15			50%


8	4			13%


11	2			7%


12	5			17%


7	4			13%

Unigene Members	Member information