RadishBase

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Information for unigene UN13272

FASTA Sequence

Unigene ID: UN13272	Length: 850	SSR
GGATTCTCTAACATCATTTCCACGAACGAAACGATCACACATAGCCTCGCGATTCCGTAAACATGGCTCTACCAAACCAGCAAACC GTAGATTATCCTAGCTTCAAGCTCGTCATTGTCGGTGATGGAGGCACAGGGAAGACAACCTTTGTCAAGAGACATCTCACTGGAGA ATTTGAGAAGAAATATGAACCTACTATTGGTGTGGAGGTTCATCCTCTAGATTTCTTCACAAACTGTGGCAAGATCCGTTTCTACT GCTGGGATACTGCTGGTCAAGAGAAGTTCGGTGGCCTTAGAGACGGTTACTACATCCATGGTCAGTGTGCAGTAATCATGTTCGAT GTGACAGCGCGGCTCACATACAAGAACGTGCCCACGTGGCACAGAGATCTCTGCCGTGTGTGTGAGAACATCCCGATTGTTTTATG CGGGAACAAAGTCGATGTGAAGAACAGGCAAGTCAAGGCGAAGCAGGTGACGTTTCACAGGAAGAAGAATCTTCAGTACTACGAGA TATCTGCCAAGAGCAACTACAACTTCGAGAAGCCCTTCTTGTACCTCGCTAGGAAGCTTGCCGGCGACCCTAACCTTCACTTTGTC GAGTCTCCCGTTCTTGCTCCCCCTGAGGTTCACATTGACGTTACCGAGCAGCAGAGGAACGAGGCTGATCTCATTGCAGCCGCAGC TCAGCCTCTCCCTGATGATGATGATGACGCTTTTGAGTAAAAATACAAAGATTCTAAAAATATGGATGTAGTTTGCGTTTCAATGA TTCTCTCTTTTCTTCTTATGTTGTGTTGATGTCACTACATTATATATGAATGATGAATCGAGAGTCTTTTAGAACT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ABD17866 etiolation seedling like-RAN2 small Ras GTP-binding nuclear protein [Brassica napus]	1182	2e-127
CBI21000 unnamed protein product [Vitis vinifera]	1168	7e-126
NP_197502 GTP-binding nuclear protein Ran-2 [Arabidopsis thaliana]	1162	3e-125
CBI28152 unnamed protein product [Vitis vinifera]	1158	1e-124
XP_002284967 PREDICTED: hypothetical protein [Vitis vinifera]	1158	1e-124

Swiss-Prot top hits (Blast detail)	Score	e value
P41917 GTP-binding nuclear protein Ran-2	1162	2e-126
P41916 GTP-binding nuclear protein Ran-1	1154	1e-125
Q8H156 GTP-binding nuclear protein Ran-3	1138	9e-124
P38548 GTP-binding nuclear protein Ran/TC4	1133	3e-123
P41918 GTP-binding nuclear protein Ran-A1	1128	1e-122

TrEMBL top hits (Blast detail)	Score	e value
A9X4K1 Etiolation seedling like-RAN2 small Ras GTP-binding nuclear protein	1182	1e-127
Q8S2Z7 GTP-binding protein	1150	6e-124
A9X4J9 Putative RAN2 small Ras GTP-binding nuclear protein	1146	2e-123
A9X4K0 Putative RAN2 small Ras GTP-binding nuclear protein	1141	6e-123
A2ICP9 Ran1	1140	8e-123

Arabidopsis top hits (Blast detail)	Score	e value
AT5G20020.1 RAN2; GTP binding / GTPase/ protein binding	1163	1e-127
AT5G20010.1 RAN-1; GTP binding / GTPase/ protein binding	1155	9e-127
AT5G55190.1 RAN3 (RAN GTPASE 3); GTP binding / GTPase/ protein binding	1139	6e-125
AT5G55080.1 AtRAN4 (Ras-related nuclear protein 4); GTP binding / GTPase/ protein binding	789	2e-084
AT5G39620.1 AtRABG1 (Arabidopsis Rab GTPase homolog G1); GTP binding	250	8e-022

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	1			17%


11	4			67%


7	1			17%

Unigene Members	Member information