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Information for unigene UN13276
| FASTA Sequence |
| Unigene ID: UN13276 | Length: 1635 |
SSR | | GGAAGCAAGCATCATAATAGAAAATTCAAAAGAATGAATACAAACAAAAAAAATGATAATCTGGAGGAGTTATTGTTAAACAATAT
AAAATAAGCACGCAAAACTTCATAGGAAATACAGAGTGCATGAAAACAACTTATTAAAAAAATATCACAAAATAGATAATCCAGCG
CGCATGTCGACCTCCCTGGACCTCCTGACCAAAACCGCATCGTTACAGCGGAGAGAGGTGGTTCCAAAGGTCAGGGACAAAACCAC
CACTGCAGTAGACTTTATTCCACCAATCACTGCTGTTGAGCCTGTCTACCATAACCTCCACCATATCCAGCTTGCCCGTTCCCTTG
ATGATTCCCATAGCCATCTGGAACATCAGCATAGCCTCCGCCATGGCTGTTAGGACGCCCCCCGACAGCACCATAACCAGGTTGTG
CTCCATAAGAGGAATCATTTCCACCGTAGCCATAACCCTGACTGCCATAACCTGCAGACGCAGCACCTCCTTGACCCATCACTGCT
GAACCTGAACCAGAACCACCCCAAGGAGCAGGAGCAGCAGCAGCATTTCCATATCCCACGTTGTTACCGTAGCCCGATGGTGCTTG
ACCTTCCCATGAAGGTCTCGGACCACTTCCAAACCCAGCTCCAGGGCCACCAGGATTCCCGTAAGGCGCGCCAGATGGATTCCCAT
ACCCTCCAAAACCCCCATAACCTACACCGTTACTTCCATAACCATAACCAGTACCATACCCAGAAGCAGCACCATAAGGAGGATAA
CCACTTCCCGCGTTTGAGGCTGCATATATCTACTGGAATCAACACGACCCTCGTAGCCACTTCCACCATATCCCGGGAAACCACAA
CTACTACCACGACCACCACCCACCGCCGCTGGCTATCCCAGGGTTAGCGTCTTTAGGAAGAGCTCTTTTAACTTCCACTTGCTTAC
CGCTCAAATCATGGAAAGTCTTGTGCAAAACAAGGTCAACCGAATCCTCAGAGTCGAACGAAACAAACCCAAACCCTCTAGGACGT
TGTGTAGCCTGGTCAATCATAATGACCGCATCGCTCACAGGGCCGTAAGTCTCGAAGTAAGCTCTAAACTCATCTGACGTCAAAGC
AGGAGGCAAACCACCAACAAATATCTTCTTGGTCCTAACGTTAGCACCACCACCACCACTATCAAAACTCCTATTACCATTAAAAC
TCCCTTGTCTCCCTGCAGGACTCTGCTCGTCTCTAGACATTGCTCTCTTCACATCAACATCTCTATTGTCGATATGGTGCTTGTCC
TGAAGAACTCTATCGATAACGGCGGGATCGGAGAACGCGACGAATCCGAATCCTCTGGGACGACCTGTAGCTTTGTCTCGCATGAC
AGTCACCTGTGAAACCTCTCCGAAATTGCTGAAGTACTCTCTCAGAAGGTTCTCGTCGGTTTCCCACGAAATGCCGCCGATAAAGA
GCTTTCCCTGATCTGATTCCATTGCTTAGGCTGTCTCACTCCACGCTCTCGTTATACCCAAAAATGATAAGCCCTAGACTCGGCTC
CGATTAAATCCCTCCCGGTGAAGAAGGGGAAAGGAGGTAGTGTCCCGAGAAATTTAGGGTTTTGGATCGTGAAATCGGGTGTGAGC
C
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002879449 hypothetical protein ARALYDRAFT_482284 [Arabidopsis lyrata subsp. lyrata] | 1651 | 2e-181 |
| NP_180899 RNA recognition motif-containing protein [Arabidopsis thaliana] | 1637 | 7e-180 |
| CAN68016 hypothetical protein VITISV_025150 [Vitis vinifera] | 1128 | 8e-121 |
| XP_002870323 hypothetical protein ARALYDRAFT_493480 [Arabidopsis lyrata subsp. lyrata] | 1128 | 8e-121 |
| XP_002285419 PREDICTED: hypothetical protein [Vitis vinifera] | 1124 | 2e-120 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9JII5 DAZ-associated protein 1 | 439 | 3e-042 |
| Q96EP5 DAZ-associated protein 1 | 422 | 2e-040 |
| Q98SJ2 DAZ-associated protein 1 | 418 | 7e-040 |
| P48809 Heterogeneous nuclear ribonucleoprotein 27C | 411 | 5e-039 |
| P21522 Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog | 294 | 2e-025 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O22791 Putative RNA-binding protein | 1637 | 5e-180 |
| A5BK88 Putative uncharacterized protein | 1128 | 5e-121 |
| B9SQV8 Heterogeneous nuclear ribonucleoprotein 27C, putative | 1115 | 2e-119 |
| Q8W034 Ribonucleoprotein 1 (Fragment) | 1095 | 4e-117 |
| B9HSS5 Predicted protein | 1075 | 7e-115 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G33410.1 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative | 1638 | 2e-182 |
| AT4G14300.1 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative | 1095 | 2e-119 |
| AT5G55550.1 RNA recognition motif (RRM)-containing protein | 627 | 4e-065 |
| AT5G55550.3 RNA recognition motif (RRM)-containing protein | 627 | 4e-065 |
| AT5G55550.2 RNA recognition motif (RRM)-containing protein | 627 | 4e-065 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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