RadishBase

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Information for unigene UN13295

FASTA Sequence

Unigene ID: UN13295	Length: 1243		SNP
GGAAGACTTAGACGCCGCTCCGTGATCTAAAGTTACTCCCCGGAGAAAAGAAGAAGAGAGTAACACAAAAATGGCGAGTAACGTAC AGCTCTCCCAGAAGGAATCTGACATCAAAATGATGTGTGCCGCTGAGGTTCACCTCGGTACCAAAAACTGCAATTACCAAATGGAG CGTTACGTCTTCAAGCGTCGCAACGATGGTATATATATCTTCAACCTTGGGAAGACATGGGAGAAGTTGCAGATGGCTGCTAGGGT TATTGTTGCTATTGAGAACCCACAAGACATTATTGTTCAGTCTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAGTTTGCTCAGT ACACTGGTGCTAACGCCATTGCTGGAAGACACACTCCTGGTACTTTCACCAATCAGATGCAGACTTCCTTCAGTGAGCCTAGGTTG CTCATTCTTACTGACCCTAGGACTGACCATCAGCCAATCAAGGAAGGTGCTTTGGGAAACATCCCAATCATTGCTTTCTGTGACAC TGACTCTCCCATGAGATTTGTCGACATTGGGATCCCTGCTAACAACAAGGGAAAGCACAGCATTGGTTGTCTTTTCTGGCTTCTTG CTCGCATGGTTCTTCAGATGCGTGGAACCATCCGTCCTGCACAAAAGTGGGATGTCATGGTGGACCTGTTCTTTTACAGAGAGCCC GAAGAGGCTAAGCAATCTGAAGACGAAGAAGCTGCACCTCTGGCAGATTTTGGACTCCCTGCACCTGAATATGGAGCTGCCGGTGG AGAATGGACCACTGCTCAGATTCCTGATGCTTCGTGGACAGGAGATGCTCAGCAGCCAATCAGTGCTGCTCCTGCAGCTGGTTCTT GGAATGATGCCAGTGCTGCTCCAGGTGCAGATGGATGGGACACAGCTGTGCCACCCCCAGCAGCAGTTCCAGCTGCTGGTTGGGAT TAATTTTTTTTGGTCATGTTTGAGATTCAAGAGTTGTAGCTTCTTGTTTTCTTTTCAAATTGTTTCTCATTAAGACCCTTTAGATA TCAATTTTGTGGCTTTTCTTGTTGCTTTGAACTGAGTTTCAACTAAATTATCTCTAATGGCATCTGAGTTTTTACAAAGATTCTCT ACATTATGTTTTTTAGATCAGTAAGAGGTTATGATCTTTTAATATATTGGTTAACTTAGATTACAAGAACGATTGTACAGTTTTGA AACACTTTTATCTACAAGTGAAAGAAACTCTACTGCATC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002888871 hypothetical protein ARALYDRAFT_895089 [Arabidopsis lyrata subsp. lyrata]	1383	1e-150
Q9ZSR8 RecName: Full=40S ribosomal protein SA; AltName: Full=Laminin receptor-like protein; AltName: Full=p40	1339	2e-145
NP_177381 40S ribosomal protein Sa-1 [Arabidopsis thaliana]	1336	4e-145
CAA61547 40kD protein [Arabidopsis thaliana]	1318	5e-143
CAA48794 laminin receptor homologue [Arabidopsis thaliana]	1318	5e-143

Swiss-Prot top hits (Blast detail)	Score	e value
Q9ZSR8 40S ribosomal protein SA	1339	8e-147
Q08682 40S ribosomal protein Sa-1	1336	2e-146
Q8H173 40S ribosomal protein Sa-2	1147	1e-124
O22518 40S ribosomal protein SA	1128	2e-122
O80377 40S ribosomal protein SA	1113	1e-120

TrEMBL top hits (Blast detail)	Score	e value
Q2V4D3 AT1G72370 protein	1288	1e-139
C6TEJ6 Putative uncharacterized protein	1141	1e-122
A9P906 Putative uncharacterized protein	1131	2e-121
A9P891 Predicted protein	1129	3e-121
B7FID3 Putative uncharacterized protein	1126	6e-121

Arabidopsis top hits (Blast detail)	Score	e value
AT1G72370.1 P40; structural constituent of ribosome	1337	1e-147
AT1G72370.2 P40; structural constituent of ribosome	1308	3e-144
AT3G04770.2 RPSAb (40S ribosomal protein SA B); structural constituent of ribosome	1154	2e-126
AT3G04770.1 RPSAb (40S ribosomal protein SA B); structural constituent of ribosome	941	1e-101

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	4			18%


6	7			32%


8	6			27%


7	4			18%


11	1			5%

Unigene Members	Member information