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Information for unigene UN13335
| FASTA Sequence |
| Unigene ID: UN13335 | Length: 1687 |
| SNP | GGTTATTGGACCGGCTACTGTTGGAGGTATTCAAGCTGGAGCCTTTAAGATTGGTGACACTGCAGGAACTATTGATAACATTATCC
AGTGCAAGCTTTACAGACCTGGATCTGTTGGTTTTGTCTCCAAATCTGGTGGAATGTCTAATGAAATGTACAATACTGTTGCTCGT
GTCACTGATGGGATCTATGAAGGGATTGCTATTGGTGGAGACGTGTTCCCTGGATCCACTTTGTCTGATCACATCCTGAGGTTTAA
CAACATCCCACAGATAAAAATGATGGTTGTGCTTGGAGAGCTTGGAGGGAGAGATGAGTACTCTCTTGTTGAGGCTTTGAAACAGG
GGAAAGTGAATAAACCTGTTGTTGCTTGGGTCAGTGGGACTTGTGCACGTCTCTTCAAGTCTGAAGTACAGTTTGGTCACGCGGGT
GCTAAAAGTGGTGGCGAGATGGAGTCTGCACAAGCCAAGAATCAAGCTCTCATGGATGCTGGAGCCATTGTTCCCACTTCATTCGA
AGCTCTTGAAGCTGCAATCAAAGAGACGTTTGAGAAACTGGTTGAAGAAGGAAAGGTCTCTCCAATAAAGGAAGTCACTCCTCCAC
AGATCCCTGAGGATCTCAGTTCTGCAATCAAGAGTGGGAAAGTCCGAGCTCCTACTCACATCATCTCCACCATTTCTGATGACAGA
GGGGAGGAACCATGCTATGCTGGTGTTCCGATGTCTTCCATCATCGAACAAGGCTTAGGAGTTGGTGATGTCATCTCCCTTCTATG
GTTCAAACGTAGCCTTCCTCGTTACTGTACAAAATTCATTGAGATGTGCATAATGCTGTGTGCTGATCATGGTCCATGCGTCTCGG
GCGCTCACAACACCATTGTGACAGCAAGAGCAGGCAAAGACCTCGTCTCAAGTCTTGTCTCTGGTTTATTAACCATTGGCCCTAGA
TTCGGTGGTGCCATTGATGACGCTGCTAGATACTTCAAGGACGCTTGTGACAGGAACCTCACACCTTATGAGTTCGTTGAGGGAAT
GAAGAAGAAGGGAATCAGAGTCCCTGGGATTGGACACAGGATCAAGAGCAGAGACAACAGAGACAAGAGAGTGGAGCTGCTCCAGA
AATTTGCTAGGTCTAACTTCCCATCAGTGAAGTACATGGAGTACGCAGTAACCGTGGAGAGCTACACGCTCTCAAAGGCCAACAAC
CTCGTACTCAACGTTGATGGAGCCATTGGGTCTCTCTTCTTGGACCTTCTAGCTGGAAGTGGGATGTTCACTAAGCAAGAGATCGA
TGAGATTGTTCAGATCGGTTACCTCAACGGTCTCTTTGTTCTTGCTCGTTCCATCGGTTTGATTGGGCACACATTTGATCAGAAGA
GGTTGAAGCAGCCACTTTACCGTCACCCATGGGAAGATGTGTTGTACACCAAGTGAAAAACTCATCTCAGCTCAGCTTTGTTTTTG
TTGTTAAATTCCTCAAATTAATTAGCTTTTGCATTCTTCTGAGAGATGTTACTACTAAAAAATGCATATCTATGCTCTTCTGTTTT
CTTTTGTTGCGATGTTATGTTTACTTTCTTATGCTTTTCATTTATCTGAACTTTTATCAACTGAGATATTCACTTCTTCTTCTTAC
CTTATATAAGTTGTAGTGTCTGTAGTGGCTGGCTAGGGATGTGTATACATCTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002863984 ATP-citrate lyase B-2 [Arabidopsis lyrata subsp. lyrata] | 2432 | 5e-272 |
| NP_199757 ATP citrate lyase subunit B 2 [Arabidopsis thaliana] | 2419 | 2e-270 |
| NP_187317 ATP-citrate lyase B-1 [Arabidopsis thaliana] | 2397 | 6e-268 |
| XP_002884600 ATP-citrate lyase B-1 [Arabidopsis lyrata subsp. lyrata] | 2395 | 1e-267 |
| NP_001042817 Os01g0300200 [Oryza sativa Japonica Group] | 2331 | 3e-260 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q54YA0 Probable ATP-citrate synthase | 1719 | 1e-190 |
| Q9P7W3 Probable ATP-citrate synthase subunit 1 | 1486 | 1e-163 |
| Q91V92 ATP-citrate synthase | 1468 | 1e-161 |
| P16638 ATP-citrate synthase | 1467 | 2e-161 |
| Q8X097 Probable ATP-citrate synthase subunit 1 | 1462 | 6e-161 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FGX1 ATP citrate lyase | 2419 | 1e-270 |
| Q9C522 ATP citrate lyase, putative; 3734-7120 | 2397 | 4e-268 |
| A2WNV6 Putative uncharacterized protein | 2331 | 2e-260 |
| Q93VT8 Os01g0300200 protein | 2331 | 2e-260 |
| A6MZ92 ATP citrate lyase alpha subunit | 2328 | 4e-260 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G49460.1 ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2); ATP citrate synthase | 2420 | 5e-273 |
| AT3G06650.1 ACLB-1; ATP citrate synthase | 2398 | 2e-270 |
| AT5G23250.1 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative | 208 | 1e-016 |
| AT5G08300.1 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative | 201 | 9e-016 |
| AT5G23250.2 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative | 162 | 3e-011 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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