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Information for unigene UN13337
| FASTA Sequence |
| Unigene ID: UN13337 | Length: 1454 |
| SNP | AAGAACAGGAAAATAATTTGTTAACACATATACATTGTAAAGAACAGAACACATAAGCAAATACGTGCCTGTGTCTTTTGAATGAA
AAACTCCAAACATTTGTTTCCCGTTCTTTTACATAAGATCAACTTGGGGAAATATAGGCAACGCATATGAAACAACCAGATTTTAC
ATTTAAAAAGAAAATTGATGAAAAGGGAAAAATGCAAAATTCAAATCAAAAATGAAAAGATGATCAAAAATCCGACAAAGGTAGAA
CACAGACGCGAGTAGATGATGTTGGTGTTCCTGTGTTTTTTTTTAAATATAAGCAGCGAACAAAAGCGTGAGAGGATCATTTGCAG
GCCATAAGCATGGAGTTTATCACATGCATTATAAGTCTTGTGGCAGAAACGTCGCTGCCTGGTACGTTGCGGTGGTGGTGCAGAAT
CTGATACACTTGCTCAAAGATTGGCCGACCGTGGGCCGCTACCATCGGGTCTGATGGGTTAATTGCTGTAACCACATCAGTCATCC
ACGCAAGCTTACGGGACGTGTCCTTGCTGATGTCGCAGGCTAGCTGCTGCAGCAAAGACAGAAGTACGCCTTGGCTCAGAGGAAGT
GGATTCATCGCCAATAGTCCACGCAGATCCACCTGTGAGCAAAGCCATGATACTATGGAGACATCGCTTCTTTGTAAAGCTGACGT
AAAAGATTCCTCGTATTTGCGTTCGGATATCAACCTGGATAGTTCTGCTATTGGGTCTGCTTCAACCTTTTCAAGAATAGCACCCA
AAGGTCCACTACTTCGTTGAGAAACCAAGGCGTTTGATCCACTAGAATTTGCTCCAGCAGCTGCGAGAGCTAAGCGATTCCTTTGG
CTCTCCGCTAATTCACGGCTCAAGGCTTGAGTAACTGACGTCGCAGAAGTAATGGTTTCCTTTAATGTATGAGCAAGCGGGGAGTG
CCCACCGTCAAACCTTTGCTGGGCTGCGTTTGTGTGCTCGGCCATCCCTTTCTGGAAGGCTGTGTCTACTTGCTCAAACATGGTCT
TGCATGACCTCTCGAAGGAAGGTATGACTGAAGCCTCCAGCCCCGACCTAAGAGCTTCCTGGAGGGCTTGCCTGCCAGATGTCTGA
AACTGGGTTTGAAATTGCTTCATTATGGTCGCCTCAAGCTTTGAATTAACAGATTTGTCAAGATGATTGACTGCTTTGTCACTAAG
TGCCCTCTGGAAGGATTCCGTGATTGAAGAAGTTACAGTTTTTTCAATAGCTGGAACTAATGCACGAGCTATGGCTGGAACAATTG
TAGCAAACTCCTTTATCGTTTTTTCACACATTGCGTTTAACTCTTTGCTCACGAAGTTTGTCACTGCATTCACAATTTGCTGTGAA
TGGTCCCGCATTGCCTTTTCATTCTTAACGATCTCCTCTTGTAAGCGGGCCCAAAGAGCATCCGCATTTGACTTGCAG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_187938 enhancer of mRNA-decapping protein 4 [Arabidopsis thaliana] | 1551 | 6e-170 |
| NP_850576 enhancer of mRNA-decapping protein 4 [Arabidopsis thaliana] | 1551 | 6e-170 |
| AAM91544 unknown protein [Arabidopsis thaliana] | 1551 | 6e-170 |
| BAF02082 hypothetical protein [Arabidopsis thaliana] | 1551 | 6e-170 |
| XP_002882815 hypothetical protein ARALYDRAFT_341449 [Arabidopsis lyrata subsp. lyrata] | 1541 | 9e-169 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q1LUT1 Enhancer of mRNA-decapping protein 4 | 172 | 2e-011 |
| Q6P2E9 Enhancer of mRNA-decapping protein 4 | 170 | 3e-011 |
| Q3UJB9 Enhancer of mRNA-decapping protein 4 | 166 | 1e-010 |
| Q3ZAV8 Enhancer of mRNA-decapping protein 4 | 166 | 1e-010 |
| Q7ZXT3 Enhancer of mRNA-decapping protein 4 | 165 | 1e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WLC5 Putative uncharacterized protein At3g13300 (Fragment) | 1551 | 4e-170 |
| Q8L7N9 Putative uncharacterized protein At3g13300 | 1551 | 4e-170 |
| Q9LTT8 Gb|AAF53066.1 | 1551 | 4e-170 |
| Q9LTT9 Genomic DNA, chromosome 3, P1 clone: MDC11 | 1462 | 9e-160 |
| B9SXA2 Putative uncharacterized protein | 1259 | 3e-136 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G13300.1 VCS (VARICOSE); nucleotide binding / protein homodimerization | 1552 | 2e-172 |
| AT3G13300.2 VCS (VARICOSE); nucleotide binding / protein homodimerization | 1552 | 2e-172 |
| AT3G13290.1 VCR (VARICOSE-RELATED); nucleotide binding | 1373 | 1e-151 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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