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Information for unigene UN13380

FASTA Sequence
Unigene ID: UN13380Length: 1404 SSRSNP
CGGTTTTACTATAATTTTATTTCAAATGTTTCGAATCAAACGAAAACTATAAAATTAATTTCAAGGTTCTTCGTATTAATAATAAG
GAGAATATTTGATACAAACACCAAAATTGAACTAAACCGGAAAGTGTAGGTAGAGAGGTAAACCAAAACAATCTCTTTTCAAGAGA
GATCAGCGATAACACGCTCACATTTATCTTCCAATATCTTCACAGCTTCAGTAAAGAGAACATCCGGAGGCAGTGATCCTGTGGAC
TCGATTTTAAATATAAAATGGTCCTTGACACTGCGCAGATCCACCAGGTCAACCAAGTCATGGTCTCTTATGCACTCCTTACACAA
GGTGCAATTGCGAGGCTGTGCTACCGTTGCCCTTTTCCTACCATTGCCCATGTCTTCAATGTCAAAAACATTCATTGGGCAGGTTT
TTACCAGTCGTTCAGCTTTCTCATCCTCAACTTCCCCTAGTAAAACCACCTCAGGAAGCATTCGATACCAAGCTGTCCCTACTGGA
GACCATTTTGCATGTGTTTTACCAATGCCCTTAATCGCATGAGCTTCAAGTTCAATTTCCTGACCAGGGCTGAGTTTTGATATCAA
GATATCCAGGTGGCTCGGAGTGATAGGGTTATCAGCAAATTCAGGGAGAGAATCTTGGCTACAGCTGAATGAAGTGTAAGTTTTTG
GCTTTGAGGTTGAAGTTGAATCTCCTGATTCTTTGATAAACTCACTTCCATTTGGTAACCATTGCAGCTCGTTCGTTAAAACATGA
AGACGTGATTGACCTTTCGGACATTTCACATGGAGTTTGAAAACGATGGTGTTCTTCTCGTTTGGCTGGTCGGTTTCGGTTAAATA
CTCAAAGAGCCTTGGATCTGCGGCAATGGGAATAAGACCAATCCTGTGAGCAAGAACTTCGTCAACAATAAGCGACGTGTTGTATG
CTATAAGCACTTTTTCAATAGCCATTGAAGGAACCTCAGCTATAAGGATCCTTCTGAAAGCATTGGCGAATGCAGCATCGATACCG
ATCATATCAAACTCCATGTCTGTCTCCGTGCAACTAATCACATCAACTTTGAAATCCTCATAGAAGTTTCCTAGCTTCACAGTGTT
GTCCACTCCCGAAGAGACATAGCTACCCGAGTAAATGACATCTGTAGTATCAACGGAAGCATCTTTTTTAGAGACGACGGCACGGT
TTTGCTTGAGTTTCAGATGCGGAGGGAGTCCGGCAGGAACGTCGGGGAGGTCGTCGATGTAGAAGTTCTTGGCGAATATCTTGTCT
TCTTCAGTCACCATCCTTTCTTTGGGAACAATTCAGTTTGTTCTAAAGGATGTCGCGAGTTTGAGAGAGAGAGAAGGTGGCGGCGA
GGGAGGAACAAACGGCGGTGAAGGGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002886582 ATRPAC42 [Arabidopsis lyrata subsp. lyrata]15704e-172
NP_176282 DNA-directed RNA polymerase subunit [Arabidopsis thaliana]15382e-168
AAB00528 RNA polymerase subunit [Arabidopsis thaliana]15337e-168
AAM64255 RNA polymerase subunit [Arabidopsis thaliana]15248e-167
XP_002888129 ATRPAC43 [Arabidopsis lyrata subsp. lyrata]14396e-157

Swiss-Prot top hits (Blast detail)Scoree value
O94616 DNA-directed RNA polymerases I and III subunit RPAC13891e-036
Q32L22 DNA-directed RNA polymerases I and III subunit RPAC13854e-036
O15160 DNA-directed RNA polymerases I and III subunit RPAC13801e-035
P52432 DNA-directed RNA polymerases I and III subunit RPAC13693e-034
Q54SN4 DNA-directed RNA polymerases I and III subunit rpac13513e-032

TrEMBL top hits (Blast detail)Scoree value
Q9C6C2 RNA polymerase subunit15381e-168
Q39215 RNA polymerase subunit15335e-168
Q8LD68 RNA polymerase subunit15245e-167
Q39216 RNA polymerase subunit14295e-156
B9S9W7 DNA-directed RNA polymerase I/III subunits, putative12791e-138

Arabidopsis top hits (Blast detail)Scoree value
AT1G60850.2 ATRPAC42; DNA binding / DNA-directed RNA polymerase/ protein dimerization15387e-171
AT1G60850.1 ATRPAC42; DNA binding / DNA-directed RNA polymerase/ protein dimerization15387e-171
AT1G60620.1 ATRPAC43; DNA binding / DNA-directed RNA polymerase/ protein dimerization14302e-158
AT1G60850.3 ATRPAC42; DNA binding / DNA-directed RNA polymerase/ protein dimerization11221e-122
AT2G15400.1 NRPE3B; DNA binding / DNA-directed RNA polymerase/ protein dimerization3414e-032

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
71  10%
 
93  30%
 
105  50%
 
111  10%

Unigene MembersMember information