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Information for unigene UN13419

FASTA Sequence
Unigene ID: UN13419Length: 1160  SNP
GCGAATACATAACTCTCAGAGATCTTCTCATCGACTGCAACTATCGCGGCGGAGCAATCGCCGTCATCAATTCTCTCCGGACAAGC
ATAGACAACTGTTACATCACACGGTTTGGAGACACGAATGGGATTCTTGTCCAAAAAGGACATGAGACTTATATTCGAAACTTTTC
TCGGTCAACACATAACCGCTGGTGGAGCCAAAGGAGAGAGGAGCTTCTCCGGCACCGCCGTGAACTTGGTGGGTAACGATAATGCC
GTCACGGACACCGTTATATTTTCAGCCGGGATTGGGGTCATGATATCAGGACAGGCGAACCTTTTGTCTGGTGTGCATTGTTATAA
CAAAGCAACCGGTTTTGGTGGAACCGGGATTTATTTGAAATTACCCGGTTTAACTCAGAACCGGATTGTGAATTCCTACTTGGATT
ATACCGGTATCGTTGCGGAAGACCCGGTTCAGCTGCAGATTTCCGGGACGTTTTTCTTAGGAGATGCGTTTATTTTGTTGAAGTCA
ATAAACGGTGTGGTTCGTGGGGTTAATATTGTTGACAACATGTTTTCCGGGTCGGGTAATGGAGTCCAGATTGTGCAATTGGATCA
GACGAATAAAGCGTTTGAGAATGTTGACCAGGTGGTGGTTGACCGGAACAATGTGAACGGCATGGCAATGAGATCGACGGTTGCTA
AAGCATCGGTCGATGGAAACGGAACGTCTTGGACCGTTGACTTTAACCCGGTTTTGTTGTTCCCGAATTTAATCAAGCACGTTCAG
TACACGCTCGTAGCACGTGAAGATGGCGCATTTCCTGTTCACGCGGTAAGGAACGTCTCGGATAATCGAGTGGTGGTTCAGACAAA
CGCACCTGTTACTGCACAAGTTTATGTAACGGTGGATCAATGAGTTTGATTGTCATGACTCATGTTTTTACCCTAATAATGATTTA
ATGATCATAAAAACTATAGTCGGTGGTGGTTTCTGGTATTTTTTGTAATTTTTCCTAACAGGAGAAATTATATTTTTACTATCAGT
AAATAAGATATTTAGAAAATTGTGATTGCAGTTGAAGAGTTGTTGGCAGACATTCACTTACTTATTTTCCTTTGTCAAGACATTTA
CTAGTCTCTTTGATATGAAATTTAATGCAATGACTAATGAAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002867894 hypothetical protein ARALYDRAFT_492866 [Arabidopsis lyrata subsp. lyrata]11276e-121
NP_193738 Polygalacturonase QRT3 [Arabidopsis thaliana]10911e-116
CAN67113 hypothetical protein VITISV_025312 [Vitis vinifera]9718e-103
XP_002303344 predicted protein [Populus trichocarpa]9475e-100
XP_002335114 predicted protein [Populus trichocarpa]9422e-099

Swiss-Prot top hits (Blast detail)Scoree value
O49432 Polygalacturonase QRT310914e-118

TrEMBL top hits (Blast detail)Scoree value
A5ATC7 Putative uncharacterized protein9715e-103
B9GY17 Predicted protein9473e-100
B9MUM4 Predicted protein9421e-099
B9PA54 Predicted protein (Fragment)9358e-099
B9T1M7 Putative uncharacterized protein9196e-097

Arabidopsis top hits (Blast detail)Scoree value
AT4G20050.1 QRT3 (QUARTET 3); polygalacturonase10923e-119
AT4G20050.2 QRT3 (QUARTET 3); polygalacturonase10923e-119
AT4G20040.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: QRT3 (QUARTET 3); polygalacturonase (TAIR:AT4G20050.2); Has 90 Blast hits to 90 proteins in 38 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).6461e-067

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  18%
 
103  27%
 
111  9%
 
124  36%
 
71  9%

Unigene MembersMember information