RadishBase

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Information for unigene UN13456

FASTA Sequence

Unigene ID: UN13456	Length: 1991	SSR
ACTGTTTTCAAGAAAGCTGGTGTACCTTCAGCCTCGGCCAACATATGTGTGGGAGTATGCAACCTCTTAGGTTCTACAGTAGCGGT GGTTTTGATGGATAAGCTGGGGAGAAAAGTATTGCTTATTGGGAGTTTTGCGGGCATGGCAGTATCGCTGGGTCTCCAGGCAATGG CATATACTTTGTTTTCATCAACTTTTGGAACCTTGTTTCTCTCTGTCGGAGGAATGCTACTGTTTGTGTTGTCTTTTGCAACTGGA GCTGGTCCTGTTCCAAGTATTCTCCTGTCTGAGATATGCCCTGGTCGTCTTCGGGCAACAGCATTGGCTGTTTGTCTTGCTGTTCA CTGGGTAATAAACTTCTTCGTTGGGCTGCTGTTTCTAAGAATGCTGGAGCAACTAGGTTCGGTGCTTCTAAATGCAATCTTCGGCT TCTTCTGCGTGGTGGCAGTTATCTTTGTGCAGAAGAACGTGATCGAGACTAAAGGGAAAGCCTCCAAGAGATAGAGATCAGTCTGC TCTCTGCCACCAGCCAGTGATCTTTTTCTTCGCACTTGCTCTTCTGCCACTTTATGTAAGACTAATATGGAATTAGGAGCTTAGTA GTAAGTAGGCACCATATATAAGGAAATGGATTTATTCAAGTATAGCCGACATTCCAATTTGATTTTTGCTAATAAAGTAAGACCGA ACGGTTTACAACCCTTTTTAATGTACAAAGGAAGTTCATATCTATCCCTAAAACTTGTTTCTTCCACAGTTTTTATCCTTCACATG TTCTTGTTCCTTTATTGTATAGCCTGTTTGCAAACACCCGTTCTAATCATGTTTCAGTAATATTTGTAATTCTTCACCCATTCATT TGCCACTTGAAACACCTTCCCGTTGTATGGCAACCACAGGCTCATTACATCTAAGACACCGGAATGATGCTGCCGAAGCGCAGCGG GTCCTTATACAGTAGTAACAGTACCTGTGCTGGCAAGGTAGAGCAATAAACGGAATTGCAGGATCCACTTGGCAAATGGGGCAAGC AACTGTATCCTCTTTATTGTTTGAGGACCTTTCCTTGGCAAATGGACTTAGAATATTCTTAATAGCTGAAGAGTTGAGCAGCGGCA GAAGCAGCAAAAGCATTTCAGAAAATTCATTCCAGACAAGTTGGCGATTCATGTACTCGAAGCTGACAGATCGGTTCATATGGGGA CTATTATAGACAAGCCTTGCTCTTAAAGCTTTTTCAATGAGGTTCCTATACCTTCCGGTATAAAGAAATGACAAGAGGTTAAGAAA AGAAGCAGCTTTATAGAAGCCTTCGATGCGTTGAATGAGGGTCCAGAGCCGCCTAGCCAGTGGTCTCTGCTCAGAATCACCCCATC TACGGAAAGCAGAGAATGACTGCAAGCGGGAGAAGAGGTACTGACCACCAACTGAGGCAACACAGTACCAAATCTTTTGAGGAGCA GAAAGTCCCGGGCCTTCGAGTCCTGTTCTGACTTTCCCAGAGAGTTGTGCAGGAGTAACTCGTTCATCTCTGTATCTAAGATTCAT GAGAGCATTTCCAGGGGTAGGTTTGTCAACCCAAATAGAGAATCTCCAAATTAGAAACTCTAGGAATGCATCCAGTTCTGGTTCGT ATTGAAACATCATTCCTGGCTAATCCCCCCCACAACCAAACAAACAAACAAACAAAAGATGATCCGTGAAGTGATTTAAAAAAAAA GAAAGGAACTGAATTGAATACCTTAGCCAAAGTGAAAACCTTAACCAACTGTTCTTTCAACATGGCAGACATTTCAACATCTAGTC TTGCAGCGTCGAACTGATTTACTCTTGAGATTGCAACCGCTATAACTGATCGGTGGGAAGAGAGGAGCGATTGAGATTCGGGGAGT AAGCGGTCATGAGAACGAATCCAAGCATCGTCGGGAGGCGGAGGCGCCGTCATTGGCAAAGCTCTGCGAACTGCCACCGTCTTATC CAATTTTCTTCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_565222 peroxin-2 [Arabidopsis thaliana]	1325	1e-143
NP_974183 peroxin-2 [Arabidopsis thaliana]	1325	1e-143
AAM61388 putative RING finger protein [Arabidopsis thaliana]	1318	9e-143
XP_002889323 hypothetical protein ARALYDRAFT_477288 [Arabidopsis lyrata subsp. lyrata]	1314	3e-142
XP_002279072 PREDICTED: hypothetical protein [Vitis vinifera]	1132	3e-121

Swiss-Prot top hits (Blast detail)	Score	e value
Q9CA86 Peroxisome assembly protein 2	1325	6e-145
Q2V4B9 Probable plastidic glucose transporter 3	778	2e-081
Q9FYG3 Probable plastidic glucose transporter 2	520	1e-051
Q56ZZ7 Plastidic glucose transporter 4	347	2e-031
Q75JQ3 Peroxisome biogenesis factor 2	332	8e-030

TrEMBL top hits (Blast detail)	Score	e value
Q3ECA2 Putative uncharacterized protein At1g79810.2	1325	1e-143
B9GXC6 Predicted protein	1121	4e-120
B9GG54 Predicted protein	1111	6e-119
B8AW27 Putative uncharacterized protein	1058	9e-113
Q6ATD1 Os05g0275700 protein	1058	9e-113

Arabidopsis top hits (Blast detail)	Score	e value
AT1G79810.1 TED3 (REVERSAL OF THE DET PHENOTYPE 3); protein binding / zinc ion binding	1326	4e-146
AT1G79810.2 TED3 (REVERSAL OF THE DET PHENOTYPE 3); protein binding / zinc ion binding	1326	4e-146
AT1G79820.1 SGB1 (SUPPRESSOR OF G PROTEIN BETA1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter	778	1e-082
AT1G79820.2 SGB1 (SUPPRESSOR OF G PROTEIN BETA1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter	778	1e-082
AT1G79820.3 SGB1 (SUPPRESSOR OF G PROTEIN BETA1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter	660	7e-069

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	4			57%


11	1			14%


8	2			29%

Unigene Members	Member information