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Information for unigene UN13481
| FASTA Sequence |
| Unigene ID: UN13481 | Length: 860 |
SSR | | GGAGAAGAAACCTTGTTGAAACTTTAATAAAAAACCCGCCGGAGTCTCACTCACTGTCCATCTCTCTCTCTCTCACTGCACTTCTC
TCGGCGAGCTCAGATCTCTGATCTAGGGCTACATCGTGCTCATCGGACATGTCGATCTCCGCTCAAAATCCGGATATCTCCGGCGA
TAGGCAATCCGGCCAAGATGTTCGTACTCAGAACGTGATGGCTTGTCAAGCTATTTCAAACATCGTTAAGACCTCGCTTGGTCCCG
TTGGACTCGACAAGATGTTAGTGGATGATATTGGTGATGTGACCATTACAAACGACGGTGCTACTATTCTTCGGATGTTGGAGGTC
GAACACCCTGCTGCTAAGGTTCTCGTCGAGTTGGCTGAACTCCAGGATAGAGAAGTTGGTGATGGGACTACCTCTGTTGTTATTGT
TGCTGCTGAGTTGCTCAAGAGGGCAAATGATTTGGTCAGGAACAAAATACATCCAACATCAATTATCAGTGGATACAGGCTAGCGA
TGAGAGAAGCTTGCAAATACATTGATGAGAAGTTGGTGACTAAGGTCGAAAAGCTTGGGAAAGCTCCATTGATAAACTGTGCTAAA
ACCAGCATGTCCTCCAAACTGATATCTTCTGACAGCGACTTCTTTGCCAACTTGGTTGTGGATGCCGTTCTGTCAGTGAAGATGAC
AAATCAGCGAGGGGAGATAAAGTACCCTATTAAGGGATCAATATTCTGAAAGCACATGGACAAAGTGCGCGAGACAGCTATTTGTT
GATGGATATGCACTCAATACTGGCGCGCTGCGCAAGGATGCCACTACGAGTTTCTCCAGCCAAGATGCTTGCCTTGACTCATCTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAB01862 chaperonin, t-complex protein alpha subunit [Arabidopsis thaliana] | 965 | 2e-102 |
| NP_188640 T-complex protein 1 subunit alpha [Arabidopsis thaliana] | 965 | 2e-102 |
| AAN72063 t-complex polypeptide 1 homologue [Arabidopsis thaliana] | 965 | 2e-102 |
| XP_002885354 t-complex protein alpha subunit of chaperonin [Arabidopsis lyrata subsp. lyrata] | 958 | 2e-101 |
| XP_002524629 chaperonin containing t-complex protein 1, alpha subunit, tcpa, putative [Ricinus communis] | 899 | 1e-094 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P28769 T-complex protein 1 subunit alpha | 965 | 1e-103 |
| P12613 T-complex protein 1 subunit alpha | 700 | 6e-073 |
| O94501 T-complex protein 1 subunit alpha | 687 | 2e-071 |
| P12612 T-complex protein 1 subunit alpha | 687 | 2e-071 |
| O15891 T-complex protein 1 subunit alpha | 686 | 2e-071 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q5E917 T-complex protein 1 subunit alpha | 965 | 2e-102 |
| Q8H0U0 T-complex protein 1 subunit alpha | 965 | 2e-102 |
| B9SF60 T-complex protein 1 subunit alpha | 899 | 7e-095 |
| Q8H9B2 T-complex protein 1 subunit alpha | 888 | 1e-093 |
| B9MUZ2 T-complex protein 1 subunit alpha | 885 | 3e-093 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G20050.1 ATTCP-1; ATP binding / protein binding / unfolded protein binding | 965 | 1e-104 |
| AT3G11830.1 chaperonin, putative | 400 | 3e-039 |
| AT5G20890.1 chaperonin, putative | 366 | 3e-035 |
| AT3G18190.1 chaperonin, putative | 353 | 9e-034 |
| AT1G24510.1 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative | 331 | 3e-031 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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