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Information for unigene UN13487
FASTA Sequence |
Unigene ID: UN13487 | Length: 1889 |
SSR | | CGTTAATAAACGGTGTGATACCAATAAACTCTTCAAACGTCGAAATTCTTCATACTGAAAAAAGCTTACGGAATATGTTACAGATG
ACAACGGTCCAATTCAACACAAAAGCACTCTTACACAAAAACATAGACTGTAAAAACTCTTTAAAACTTCAAACTTATCAACCAAA
CAAAACCCACTGACTTCTTGACAAAAGCTATTACTCAGTTAGGACTGAAGAACTTAAGCTTAAGTCCTTGAGTAACCATGCTCCAT
ATCCCACCTATGGAGAACGCCAGGCTGAATGCAACTCCTAACCAACCCAATCCCCAATGGAAATACCAATTGAAACTGTACTTGGC
CGGTTTCTTGATCAAAACCCACATGAAGCAAGGATAAGCAAACGTGACCGGAAGGGTGAGTCCACCGAGCAAACCCGCGAGACTGG
ACAGGAAAGGGAGTGCCACGCCGATGAAAAAGGAGACAAAACCGAAAAAGACTCTAAAACCTGATCTGACCCAAATTGAACACGGC
TTGTTGGTTCGGCTTGTGTAGCCAGCCTCAAAGCTGTCAAAGGCGGGCATAGAGTATATCTGAAAGCTGCTCAAGCAACTGAAGAC
TACTAGGAGAAATGCCGTCGCTAATAAACCTCGAGGAATGTCGTGAATGTGGAATGCATAAAGAGCAGCGAGCATACCTCCTGAAG
GCATAAGGTTCCCATAAGCCCAAAAACCTCCGATGGAGATTGGAAAGATACACAGAGCAATGAAGAAGTAAGAAACTTTGGCTCCT
CTCCACATTGGTACATGAGCGGATGCTTAAACGTTGATGGCATCGTCGACTGAATTTCAAGAACCAAGTTGTGACCTCTGAAGGCA
AAAGCTACAATACCAAGAGCATTCAACACAGAAAAAAGCGAACCAGAAAGCGAAGGCATAGCGAGTGGCTCGTAGGAAATAGTGGC
TGGTCTTGGTTGACTAACAGAGAGAACCCAAACCATTGTAGAGTAAGTTATCGCAGTCACTGCTCCTATTAAGGAGAGTCCCGCGA
TGGAATTGAGGTTTGGAAGTTGAGACAGAACGATGCATAGAGAAGTAAACACCAGATACCACTCCACTGTTGTTAAAGGGTTCGAG
GTGCATAATGGACCACAAACTATTTGGAAGAAGAGTTTCATTGTCTCTCCACCGATCAGAATAAGAGCTGTCGCAGTTCCTGCTGA
TAAGTAAACCGTAGGAAACAATGCAAGCCAAACTCCCAATCTTTCTCCAAAGGCAGCTTGTGCAAGCTCGACATATCGGTTGTAAC
GTTTGCCTGGGACAGCTTCGTGTAACTGAACTAGAATCCACAGTGTGTAGAGTTGCCAAATATAGGCTATTGTCAGTGACAGAATT
CCCCAACTCCAGCCAAGAAACGTAAACGCAACGGGAAGAACGAGGGCTTGAAACCCAACACCAGCGTTTAGGTTATGAAACGCGGC
ATAGTGAGCGTTTCCGTTACGAGACTCAGTGATAGGAAGCCAAGCGTCTTGTGGGTTGAGCTTAGTGAGATGGCCCACTTCCTCTA
GATATCCTTTCATGTTGACAAGAACACGTTTCATAGGAGTTCCGATGGGACTCAAGAACCTCGGCGATATGAAGGAAGTAGGAGTC
CATGCCGCCGACGAGGATTTAGTTGCGGGGCGAGGAGATCTTTGACCGGACGGAGTTAGAATCTCTGGAGTGGATACTCGCGGCGT
CGCTGGCATTGATATTAGCTCTGTCTCGGGTCTCTCGTCCATCGTTCTATATCTCTATCTGAGCAGGTGGAAAAAGATGGTTTTTG
TTTTGCTTTTTCTTTCTCACTATCACTCTTTTTTTATTATCAAATTTTCTCACTATCACTCTCTCTCTCTCACTCTAGTTTCC
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GenBank top hits (Blast detail) | Score | e value |
NP_175198 Lysine histidine transporter-like 8 [Arabidopsis thaliana] | 1642 | 2e-180 |
XP_002894065 amino acid transporter family protein [Arabidopsis lyrata subsp. lyrata] | 1642 | 2e-180 |
BAA82706 amino acid transporter-like protein 1 [Arabidopsis thaliana] | 1637 | 9e-180 |
XP_002327101 lysine/histidine transporter [Populus trichocarpa] | 1578 | 6e-173 |
XP_002510286 amino acid transporter, putative [Ricinus communis] | 1570 | 5e-172 |
Swiss-Prot top hits (Blast detail) | Score | e value |
Q9SX98 Lysine histidine transporter-like 8 | 1642 | 1e-181 |
Q84WE9 Lysine histidine transporter-like 7 | 618 | 5e-063 |
Q9LRB5 Lysine histidine transporter 2 | 535 | 2e-053 |
Q9SR44 Lysine histidine transporter-like 2 | 525 | 3e-052 |
Q9FKS8 Lysine histidine transporter 1 | 510 | 2e-050 |
TrEMBL top hits (Blast detail) | Score | e value |
B9MVJ1 Lysine/histidine transporter | 1578 | 4e-173 |
B9R7J3 Amino acid transporter, putative | 1570 | 4e-172 |
A5AT49 Putative uncharacterized protein | 1552 | 4e-170 |
B8BPP2 Putative uncharacterized protein | 1177 | 1e-126 |
Q2QQS3 LILLIM08, putative, expressed | 1171 | 7e-126 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT1G47670.1 amino acid transporter family protein | 1642 | 8e-183 |
AT4G35180.1 LHT7 (Lys/His transporter 7); amino acid transmembrane transporter | 618 | 5e-064 |
AT1G24400.1 LHT2 (LYSINE HISTIDINE TRANSPORTER 2); acidic amino acid transmembrane transporter/ amino acid transmembrane transporter/ neutral amino acid transmembrane transporter | 535 | 2e-054 |
AT1G67640.1 lysine and histidine specific transporter, putative | 525 | 3e-053 |
AT5G40780.1 LHT1; amino acid transmembrane transporter | 510 | 2e-051 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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