RadishBase

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Information for unigene UN13503

FASTA Sequence

Unigene ID: UN13503	Length: 6364		SNP
GGTATATGCGTGATACACAATCTATTAATTATAATTAATTTTATTTCAATACCATTTTTTTAATCCTATCCTATACTAACTATCAA TATTTAGGTCTTATAATACCTCAGGAGCTAATGAAACTATTTTAGTAAAGTTTAATTGTCTCAATTCCCGTGGGATCGCCCCAAAA ACGCGAGTTCCTTTTGGATTTCCTTCTTGATCAATGACAACTGCGGCATTGTCGTCATATCGTATTATCGTCCCATTCTTACGTTT GAGTTCTTTACAAGTACGTACAATTACAGCTCTGATCACTTCTGATCTTTCGAGAGGAGTATTTGGGATTGCTTCCTTGATTACAG CAACAATAACGTCACCAATATGAGCATAGCGGCGATTACTAGCTCCTATTATTCGAATACACATCAATTTTCGAGCCCCGCTGTTG TCTGCTACATTCAAATAGGTTTGTGGTTGAATCATATTTTTGTATCTCTTCTTTTAGTGCAAAGGACGAAGTAAAAAAATATTGTT TGTCAAAAAAAAAACTTATAATCTTTTTATCCTTAAATGTTATTTAGCTTTTTCATTCTATATTCCTATTCACAAATAATGAATTG GGTTTTTATAGGCATTTTTGATGCCGCTATTGAAATAGCTTTTCTGGCTATATTTTCTGGTACACCACCCATTTCATAAAGGATTT TACCTGGTTTAACCACAGCTACCCAGTACTCTGGGGATCCTTTCCCAGAACCCATACGCGTTTCCGCGGGTCTTACTGTAACTGGC TTGTCTGGAAATATACGTACCCAAATTTTTCCACCACGTCGTATATTTCGTATCATTGCTCGTCGCCCTGCTTCTATTTGTCTAGA TGTAATCCAAGCGGGTTCAAGTGTTTGAAGAGCATATCTGCCAAAACAAATACGATTCCCACGAGAGGATATTCCTTTTAGTCTTC CTCGGTGTTGTTTACGAAATTTGGTTCTTTTTGGGTTATAGTTGATGGGTTTTTTCTAAATGAGAAATTCCATCTCTACTGCAGAA CTGGACGTGAGAGTTTCTTCTCATCCAGCTCCTCGCGAATAAAAGGATTAATTAAGATATAGATGTAGTTAATGATTAATCCTATT AATCATGGTATTTTTTTTTATTTCATCTTATCTCTTCTAAATTTGTGTATGTCTTTTTTTAAATAGAATCAAAGATCAATTTTATT TCGATTTATTTAAAAATAACGTAATATCATCATTACAAATGTAATTTTTGTTAGAGTTAGAATATTATAACAAATCCTTATTTTAT TTTTTTCATTGTTTTTTTCATCTTTTATTACTTTTTTTATTTGAAAAAAAAACCAATTTTTCGCCGGCGAATATTTACTCTTTCAA TATCTATTTAAGTTTGCTGTTTATACCCCGAGGTCTCAGAATCAAAATCAGAAATCAGAATAGATAATAAAGTTTCTGGTTTATTC CGCCATCCTGTCCAATGAATTACTAAGATTTCTTGTTCACTAGAATCCTATATATTCATGGGTTCCGTCGTTCCCATCGCTTCTTG ATTAATCATTAGGCCTGAATTCTACAATGGAGCTTTTACATGAAATTTTGAATTTCATTTTTTTTTTTGAGGCAATTTTCTCAGTT TTTATTGGCTCAAGGCTCTTAATTTTTTGTTTTCGGAACAGATTTATCTAATTATTATGAATGAATCTGTATTGATGCTTTATTAC ATTGCTTTTCTTACAGTGACCTCATAGATTTTCCAAATTGGAATCATATATCATTAATATTCAATTTTTTCGCTCTTTCTTTCATC CTTCCATTTATCCGCATACTTTTTGATTACCTTTCATAACTTAATAATCATCTTTCTTTATTCTTTTTTTTTTTTAGTCAGTTGCT CCAATGATATGATCAGCCTATCATATCTTGACTAATTTTTTGGATCCAGATAATGCGAAGCAATGAGTTGCTTAGGTTATTTATTA ATGCTGTAGTTATTAGTTGCTCTTATAGGTAAGTTCTTTTTTTTTTATCGTAATCTAACCCTAAACCAACGAGTCACACACTAAGC ATAGCAATTATATCAAAGGAGTTTTGATGGAAATGTTTATTCAACCTTATAGAATTGCTTATTTTTTTTCTTAAACATAAAAAAGA AGACTACAAGTTTTTATTTTTATTTCTTTTTTTATTTCTTTATAGTGTTATACTATATAGTTTTCGTTTTTTATCATTGGATAAAA TGTAAAGACAAATAAAGTTTTTTTATTCTTCGTCTACGAATATCCAAATTTTTATTCCTAAAACCCCATAAATAGTTCGAACTGTA TAGGAACAATAATCAATTTTAGCTTCAATTGTTTGTAAAGGAACTCTGCCTTCTCTGATCCATTCAACACGTGCAATTTCTTTTCC GTCGATACGTCCTGCAATTTGTACTTGAATTCCTTTTGTATTCGCCTGTTCAGTTAATTCAATAGCTTTTTTCATTGCTTTTCGAA AAGAAACACGATTTTTTAATTGGCCAGCTATAAATTCTGCAAGAATATTAGGATGCCCATACGGATTGGAAATTCGGGTAATAGCA ATGTTGAGTTTTCTATTGGCACAATTAAGTTCTTTTTGAACATTCATCTGTAATTCTTCGATTCTTCGGGGTTTATCTTCAATTAA TAATTTAGGAAATCCCATATAGATTATGATCTGAACGAGATCGATTCTTTTTTGAATTTCGATACGTGCAATTCCCTCCATACCAG AGGATATTCTTATATTTTTTTGGACATAATTTTTAATACAGTCTCGTATTTTTTTATCTTCTTCTAAACCTTCAGAATACTTTTTT GGTTGTGCAAACCAAATAGAATGATGACTTTGGGTTGTACCAAGTCTGAAACCAAGTGGATTTATTTTTTGTCCCATAGGCCTCCA CTACTATATGTATCGTAACATGTTAGATTTATGTTTTCATTGCTGCATCCAGGTTTTTTAAAATACATTAAATATTCTTCATATTG TTGATATAAGGATATATCTTCCAATACGATAGTTATATGACAAGTGGATCTTTTTATTGGGAAACTCCGTCCTCGTGCCCGAGGTT TTAATTTTTTCACCGTATTTCCTTGATTCACTTCAGCTTTACTAATGACTAAATTGGTTTCTTTGAAACCCTTATTGTGACTAGCA TTTGCTGCTGCAGAATAAACTAATTTAAAAATGGGATAACATCCTCGATACGGCATAAGTTCTAATATCATAAGTGCTTCTTCGTA GGAACGTCCACGGATCTGATCAATAACTCTCCGTGCTTTGTGGGCAGACATAGATATATATTGCCCTAAAGCATATACGGAAGTAT ATGATTTCTTCTTTTTCTTCTTTATCATAAGGTTTACCTCTCACTAAAAAAAAATTTATATTCATTATTCATTTTTTTTGAATTCA TTTAATTAACGACGAGATCTATTATCATTTTTCGCGTGTCCTCGAAAATTTATAGTAGGTGAAAATTCTCCCAATTTATGTCCTAC CATAAGGTCGATTATATAAACGGGTAAGTGTTCCCTTCCATTATGTATAGCGATAGTATGGCCAATCATTGTGGGTATAATAGTAG ATGCCCGGGACCAAGTTATTATGATTTCTTTTTCCGCCTTTGTATTAAGCTTCTCTATTTTTCTTAATAAATGCTTTGCTACAAAA GGATTTTTTTTTAGTGAACGTGTCACAGTTAATTAACTCCTATTTTTTTTTAAGACGAAGAAAGAAATTCTATTTTCTCTCCTATT TACTACGGCGACGAAGAATCAAAGTCTCACTATATTTTTTCCTTTTTCTAGTTCTTCTTCCAAGCGCAGGATAACCCCAGGGGGTT ACGGGTTTTTTTCTACCAATTGGAGCCCTCCCTTCACCACCTCCATGGGGGTGGTCGACAGGGTTCATAACTACTCCTCTTACTAC AGGACGTTTACCTAGCCAACATTTCGATCCGGCTCTACCCAAACTTTTCTGGTTTACCCCAACATTTCCCACTTGTCCGACTGTTG CTGAGCAGTTTTTGGATATCAAACGGACCTCTCCAGAAGGTAATTTTAATGTGGCCGATTTCCCCTCTTTTGCAATCAGTTTCGCT ACAGCACCCGCTGCTCTAGCTAATTGTCCACCCTTTCCAAGTGTGATTTCTATATTATGTATGGCCGTGCCTAAGGGCATATCGGT TGAAGTAGATTCTTCTTTTTGATCAATCAAAACCCCTTCCCAAACTGTACAAGCTTCTTCCAAAGCATACGGCTTTCTGAATGTAG ATGATGATATCTATACGGATGGATCTTATATATATCGTAGAATTCTTCTATATATGGTAGAAGTACCACACGAGTGCATATATAGG AATCAAAATCTGCCGAATAACTTATGTTATGATCTTCTACATACTAGGTCTTCCCGTTCCGTCATCTGGCTTATGTTCTTCATGTA GCATTCAGACCGAATGACTCTATGAAATTACGTCGATACTTCCACATATTATGGGTAACGTAGGAGACATCTCTATTTTTCCCCGG GGGAATCTTTAGAATTACCACTGCTTAGCTTTCAATTCGCCTCTGACCATCAAATGAAATGTGAATAACCCGTCCTCCTCTCTTTG AAACAAGGGGCGCTTATGGTTCTGTCGGTGCTTGAAACAATTTTGTCTTCTCCATATTACTATATCTCTAGAGTCAATAATTTTAT ATGAGGAACTACTGAACTCAATCACTTGCTGCCGTTACTCTTCAGTTTTCTGTTGAGGTCTATCCTGCAGAGGTACTCAAATTGGA TCAGTGATCGATTTCTAGGTTTTGTCGTAAACCTAATTGGTTACTTCCAATTACGTAAATCAAATAGTTCAAACCGCACTCAAAGG TAGGGCATTTCCCATTTTTATAGGAACTTCTGTACCAGAAACAATGGTATCTCCAATTATAGCCCCTCTGGGATGTAAAATATATC TCTTCTCACCATCCCCATAGTGTATGAGACAAATGTATGCATTTCGATTAGGGTCGTATTCTATGGTTACGATTCTACCATATATG TCTTTTGTATTTCGTCGAAAATCTATTTTACGGTATAGACGCTTATGACCTCCCCCTCTATGCCTTACGGTAATGATTCCTCTGGC ATTACGACCTTTACCACAATGATGCTGCCCATAGATCAAATTATTTCGTGGATTGGATTTCACTTGACTGTCTACGGCTCCATTGC GTGTGCTCGGGGTAGAAGTTTTGTATAAATGTATCGCCATGCTATTAAGTATTTTGATTTAAGTTCTTTTCTTTCTAAGAGGTGGA ATAGAATAACCCGGTTGAAGCGTAATGATCATACGTCTGTAATGCATTGTATGTCCCAGAATAGGTCCCATTCTTTTAACCTTTCC GGGGAGTCGATGACTATTCATAGCTATTACCTTGACACCAAAGAAGAGTTCGACCCAATGCTTTATTTCTGTCCTAGTTGATCCTG ATTCGACATTAAAAGTATATTGATTTTTCCCCAATAACCGAATACTTTTGTCTGTAAATACTGCATATTTGATTCCATCCATAAAT CGATTTTCTTCCCTATGAGTTCTAGTCTCAATAAGAATGCTAGTTCTTACTGTTCATATGTTATGATATGAATATACCACACCAAT TCGTTATGTATAGATGATGAGAAGATTCCATTGATACAGAGCCAATTCCAATAGACTTATTGGAGGGTCCCATTGGCGTGCATCCA GTAGGAATTGAACCTACGAATTCGCCAATTATGAGTTGGGCGCTTTAACCATTCAGCCATGGATGCTTAGTGGGGATCCTCGTACA TGGTGAATAACCAAATTCCAATTGAAATGAAATCTTTAGGATAAATCAATGCAATTTAGGAGGAATCAATGAAAGGACATCAATTC AAATCCTGGATTTTCGAATTGAGAGAAATAGTGAGAGAGATCAAGAATTCTCACTATTTCTTAGATTCATGGACCCAAATCAATTC AGTGGGATCTTTCATTCATATTTTTTTCCACCAAGAACGTTTTAGAAAACTCTTGGACCCTCGAATTTTTAGTATCCTACTTTTGC GCAATTCACAGGGTTCAACAAGCAATCGATATTTCACGATCAAGGGTGTACTACTATTTGTAGTAGCGGCCCTTCTATATCGTATT AACAATCGAAATATGGTCGAAAGCAAAAATCTCTATTTGAAAGGGCTTCTTCCTATACCTATGAATTCCATTGGACCCAGAAATGA TACATCGGAAGAATCTTTTGGGTCTTCCAATATCAATAGGTTGATTGTTTCGCTCCTGTATCTTACAAAAGGAAAAAAGATCTCTG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ACY66292 ribosomal protein S3 [Brassica napus]	1115	1e-118
NP_051096 ribosomal protein S3 [Arabidopsis thaliana]	1103	3e-117
YP_001123237 ribosomal protein S3 [Arabis hirsuta]	1102	4e-117
YP_001123588 ribosomal protein S3 [Draba nemorosa]	1101	5e-117
YP_001123068 ribosomal protein S3 [Aethionema grandiflorum]	1100	6e-117

Swiss-Prot top hits (Blast detail)	Score	e value
P56798 30S ribosomal protein S3, chloroplastic	1103	1e-118
A4QKN0 30S ribosomal protein S3, chloroplastic	1103	1e-118
A4QLX1 30S ribosomal protein S3, chloroplastic	1103	1e-118
A4QJW9 30S ribosomal protein S3, chloroplastic	1103	1e-118
A4QK56 30S ribosomal protein S3, chloroplastic	1102	2e-118

TrEMBL top hits (Blast detail)	Score	e value
D1L8S6 30S ribosomal protein S3, chloroplastic	1115	8e-119
B1A973 30S ribosomal protein S3, chloroplastic	1047	6e-111
D3WEN8 30S ribosomal protein S3, chloroplastic	1044	1e-110
D3WDB0 30S ribosomal protein S3, chloroplastic	1040	4e-110
A5CB43 Putative uncharacterized protein	1037	9e-110

Arabidopsis top hits (Blast detail)	Score	e value
ATCG00800.1 encodes a chloroplast ribosomal protein S3, a constituent of the small subunit of the ribosomal complex	1104	8e-120
ATCG00810.1 encodes a chloroplast ribosomal protein L22, a constituent of the large subunit of the ribosomal complex	811	7e-086
ATCG00830.1 encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex	746	2e-078
ATCG00860.1 Encodes an unknown protein. This gene is regulated by AtSIG6 transcriptionally.	746	2e-078
ATCG01310.1 encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex	746	2e-078

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


21	3			2%


19	14			7%


9	35			19%


8	24			13%


6	29			15%


11	19			10%


7	30			16%


10	16			8%


12	15			8%


20	2			1%


18	2			1%

Unigene Members	Member information