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Information for unigene UN13508

FASTA Sequence
Unigene ID: UN13508Length: 1115 SSR 
GCTGAAACAAATGACAATTCATAACAGAGAACTTCAACATACTCCCAAGATAGTTAATACATCTGCAGAAATCAGCTTCAAAGATC
CATGTCATAACAGATTTTGATATTTTAGTACACTCTTGGGATAAACAGTGATAAAGAGTACTGTGTTCAAACGGTTTGTAGTTTGA
TTTCTAGCATATCCTAGTTTCACTTTCACATGTAACCTCCAAAAGGTGGTGGTGGAGGTGGTGGGTAGGCCCCACTACCATTAGTC
ATCATCGGGGGTGGTGGTGGTGGCAGTGAACCAGATGGAGGTGGTGGTGGCGGTTGAGCTTGAGGCGGTGGTGGTGGTGGTGGCAG
AAGGCCATTTGAATCAACTGTGGACTGAGGCTTGAATGGTTCTGGTTTGTTCGGCTTGAAATACACCTGCAAAGTAAACATCTTTG
AGTCTGGATCCCAGTGAGAGAAAAACTTTGGGGTTGACTTGTCTATCTCTGTGCTTGGAACCTTGAAGGCTATGGTTTCATATGGT
TCAGCTGCAAACAGCAGGTATTGATACTTCTTGTCGTAAGGTTGAACTTTCTGCTCGAATGAAGACATGACACGATGTTTAGGCTT
TATGTTGTCCTCTATTTCAGGATACTCAATCTGGAACAGAAGAGATCTTTGCTTCAGCTCAGGGTCGTACTGCTTTGTGACGCGGT
ACCCTGGTCTACCGATTTTCACTGTTCTGCGGACAGAGACAGTGCGCTTGTGGGGCTGTGGCTGAGTAGGAGCTTCTGATGCCTCA
CGAGCAGCTCTCTTAGCCAAGTTGGTCTGATGCCTCTTACCTTGGGTATGCGCCAAGTAGTTTCCTTCGTTGTTATGCAGCGTTAG
ACACAGTTTGCACTCATAGCTTCCGAGATGATTTCGCATGAAATAGGGATCTTTGGCAATGTCTATGGTTTCGAGAGCAAGACGAC
GGAGACGCTCACGGCGATCTATGGCCTCGTTTTGGCTCGAGGCGGCGCCTCCGCCTCCTGGCTTCGATCCCCATTCTCTGTCCATA
GCTTACTGGTCAATCCTCTCTATCGCTCGCTCTTCGATTTTGAGCCCTGAAGAAGAATACTCTGAAAATTTGGGATGGGTCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002881233 hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata]12962e-140
NP_565747 splicing factor 3A subunit 2 [Arabidopsis thaliana]12943e-140
XP_002323495 predicted protein [Populus trichocarpa]11851e-127
XP_002519451 Splicing factor 3A subunit, putative [Ricinus communis]11681e-125
XP_002266748 PREDICTED: hypothetical protein [Vitis vinifera]11544e-124

Swiss-Prot top hits (Blast detail)Scoree value
A5PJN8 Splicing factor 3A subunit 28862e-094
Q15428 Splicing factor 3A subunit 28853e-094
Q6AXT8 Splicing factor 3A subunit 28827e-094
Q62203 Splicing factor 3A subunit 28101e-085
Q54B65 Splicing factor 3A subunit 26632e-068

TrEMBL top hits (Blast detail)Scoree value
O80897 At2g32600/T26B15.1612942e-140
B9IFT9 Predicted protein11858e-128
B9S0D2 Splicing factor 3A subunit, putative11687e-126
A9NV96 Putative uncharacterized protein11079e-119
A9NVY1 Putative uncharacterized protein10981e-117

Arabidopsis top hits (Blast detail)Scoree value
AT2G32600.1 hydroxyproline-rich glycoprotein family protein12941e-142
AT1G61080.1 proline-rich family protein1702e-012
AT3G22800.1 leucine-rich repeat family protein / extensin family protein1585e-011
AT4G13340.1 leucine-rich repeat family protein / extensin family protein1585e-011
AT1G59910.1 formin homology 2 domain-containing protein / FH2 domain-containing protein1496e-010

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
69  75%
 
81  8%
 
111  8%
 
121  8%

Unigene MembersMember information