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Information for unigene UN13508
| FASTA Sequence |
| Unigene ID: UN13508 | Length: 1115 |
SSR | | GCTGAAACAAATGACAATTCATAACAGAGAACTTCAACATACTCCCAAGATAGTTAATACATCTGCAGAAATCAGCTTCAAAGATC
CATGTCATAACAGATTTTGATATTTTAGTACACTCTTGGGATAAACAGTGATAAAGAGTACTGTGTTCAAACGGTTTGTAGTTTGA
TTTCTAGCATATCCTAGTTTCACTTTCACATGTAACCTCCAAAAGGTGGTGGTGGAGGTGGTGGGTAGGCCCCACTACCATTAGTC
ATCATCGGGGGTGGTGGTGGTGGCAGTGAACCAGATGGAGGTGGTGGTGGCGGTTGAGCTTGAGGCGGTGGTGGTGGTGGTGGCAG
AAGGCCATTTGAATCAACTGTGGACTGAGGCTTGAATGGTTCTGGTTTGTTCGGCTTGAAATACACCTGCAAAGTAAACATCTTTG
AGTCTGGATCCCAGTGAGAGAAAAACTTTGGGGTTGACTTGTCTATCTCTGTGCTTGGAACCTTGAAGGCTATGGTTTCATATGGT
TCAGCTGCAAACAGCAGGTATTGATACTTCTTGTCGTAAGGTTGAACTTTCTGCTCGAATGAAGACATGACACGATGTTTAGGCTT
TATGTTGTCCTCTATTTCAGGATACTCAATCTGGAACAGAAGAGATCTTTGCTTCAGCTCAGGGTCGTACTGCTTTGTGACGCGGT
ACCCTGGTCTACCGATTTTCACTGTTCTGCGGACAGAGACAGTGCGCTTGTGGGGCTGTGGCTGAGTAGGAGCTTCTGATGCCTCA
CGAGCAGCTCTCTTAGCCAAGTTGGTCTGATGCCTCTTACCTTGGGTATGCGCCAAGTAGTTTCCTTCGTTGTTATGCAGCGTTAG
ACACAGTTTGCACTCATAGCTTCCGAGATGATTTCGCATGAAATAGGGATCTTTGGCAATGTCTATGGTTTCGAGAGCAAGACGAC
GGAGACGCTCACGGCGATCTATGGCCTCGTTTTGGCTCGAGGCGGCGCCTCCGCCTCCTGGCTTCGATCCCCATTCTCTGTCCATA
GCTTACTGGTCAATCCTCTCTATCGCTCGCTCTTCGATTTTGAGCCCTGAAGAAGAATACTCTGAAAATTTGGGATGGGTCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002881233 hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata] | 1296 | 2e-140 |
| NP_565747 splicing factor 3A subunit 2 [Arabidopsis thaliana] | 1294 | 3e-140 |
| XP_002323495 predicted protein [Populus trichocarpa] | 1185 | 1e-127 |
| XP_002519451 Splicing factor 3A subunit, putative [Ricinus communis] | 1168 | 1e-125 |
| XP_002266748 PREDICTED: hypothetical protein [Vitis vinifera] | 1154 | 4e-124 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| A5PJN8 Splicing factor 3A subunit 2 | 886 | 2e-094 |
| Q15428 Splicing factor 3A subunit 2 | 885 | 3e-094 |
| Q6AXT8 Splicing factor 3A subunit 2 | 882 | 7e-094 |
| Q62203 Splicing factor 3A subunit 2 | 810 | 1e-085 |
| Q54B65 Splicing factor 3A subunit 2 | 663 | 2e-068 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O80897 At2g32600/T26B15.16 | 1294 | 2e-140 |
| B9IFT9 Predicted protein | 1185 | 8e-128 |
| B9S0D2 Splicing factor 3A subunit, putative | 1168 | 7e-126 |
| A9NV96 Putative uncharacterized protein | 1107 | 9e-119 |
| A9NVY1 Putative uncharacterized protein | 1098 | 1e-117 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G32600.1 hydroxyproline-rich glycoprotein family protein | 1294 | 1e-142 |
| AT1G61080.1 proline-rich family protein | 170 | 2e-012 |
| AT3G22800.1 leucine-rich repeat family protein / extensin family protein | 158 | 5e-011 |
| AT4G13340.1 leucine-rich repeat family protein / extensin family protein | 158 | 5e-011 |
| AT1G59910.1 formin homology 2 domain-containing protein / FH2 domain-containing protein | 149 | 6e-010 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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