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Information for unigene UN13546

FASTA Sequence
Unigene ID: UN13546Length: 1499 SSR 
AAAAGCATAACTTATACTACATAGAATAATAGAGCTAAAGTGAGGGACAAGACTGTATACTAAAAGCATAACTTATACTACATAGA
ATAATAGAACTGAAGTGACATGTTTGTCTGCATAAATACCAAAATAAATAAGTTTGCAATAAGTACCCAAAAGCATTAAAACCATA
ACAGAGAGAGAGAGTTCATCATATTTAAGCTGAGAGTTTGATCTTCTTGGCTGCTGGCTCATCTTCTGAAACATGAACCTCAGATT
CTTCTTCCTCCTCCTCTTCTTCGTCTTCTTCTTCCTCTTCCTCTTCTTCTTCTTCTTGGTCATCTTCTTCTTCAGCGGAATTTTCA
GACTTTACTTCATCTTCTCGCTCCTCCAGCTCTTTCTTCTTCTTCACCTCCTCTATCACATCCATCAATTCTCTATTCACCTGTGG
GTTCTGAAGGAAGTCAGAAATGTCATTTGGGCAGCAAGGACATTTCATGACGTTCTTCTGTGCACGCAGAGTACGCCCACCTCTGC
TCCTCTGCCTCACTTGAGTTATCCCAGCAAATTTACCAGTTAGGCATTCCTTGCAGAAGTTGTGAGCGCAAGGCGTTGTCACTGGA
GAGCTCATGACTTCCCGACAGATTTGGCAACCAAATTCTTTGAGAAATTTGTCCCTATTGTTTCCTGCCCCCTTCCTCGCCCTCTT
CCTCTCTGCAGGATCCAAAGCAGCAATCGCCTTTTTGCTAGCAGGTGGAGACTTCATCCACTTCCAACGACCATCAGCTTCATCAA
AATCCCATGATGGGCTTTCCTTTCTCACAAACATCTCAGTAGCCTTCTTAAGCTCTGGAATAGAAGGCAGAGGTCGTGGACGATCA
CCATGCTCATCACTGGTCCATGGGGCTGGTTCGTTGTCACACCTGACAAAAAGGTAACGACAAACTCTCTTGCCCTGAACTCCAAC
TTTTCGCCAGCACTTTTCAATCCTGTAGACTCCATCGTATCTCACACTTTTCTCCGCAGGGGCATAGGCAGAACGCTTCTCCTTGT
GAGACCTGACAACTCTTACAGGATAGCCCATTTTGCAACTAATCCTCAGAGCTTCATTTGACTTTGTAAACTTCTGATCAAACGCC
TGATCTTTGTTGGTTCTCTTGTTCCCCGTCAGATCTCTTCCTCCACTTCCAGTGTAGAGAAACCACTCTCCATGATCCTCATCATC
CTTGTAACCACCAGAGAGCGCCACAGACTGAGCTCCATGACTCGACTGTCCACCAATCCCAGCAACATGCGGGAAGTGAGCTCCCC
ACTGCCGACACTCCTGTCTATCCTCCCAAGATTCCCCAACCAAAACGCCCTGGTTCCTGTTCGGATCATTCTCCGCCAGAATAGGC
CCGAAATGATCAGACGGCACGGTCACGTATATCCTCCCACTACAAGCGTTAGCCTTCCCCGTCTTCTTAGCCCTCTCTGTAGTAAA
CGCCTTCTCAGGCCGGTCCATGTTTCTGATGAACTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002887003 predicted protein [Arabidopsis lyrata subsp. lyrata]17254e-190
XP_002888476 predicted protein [Arabidopsis lyrata subsp. lyrata]17013e-187
XP_002886735 hypothetical protein ARALYDRAFT_315436 [Arabidopsis lyrata subsp. lyrata]16896e-186
NP_176092 E3 ubiquitin-protein ligase ORTHRUS 2 [Arabidopsis thaliana]16323e-179
AAG29238 transcription factor, putative [Arabidopsis thaliana]16224e-178

Swiss-Prot top hits (Blast detail)Scoree value
Q96T88 E3 ubiquitin-protein ligase UHRF14421e-042
Q8VDF2 E3 ubiquitin-protein ligase UHRF14383e-042
Q7TPK1 E3 ubiquitin-protein ligase UHRF14374e-042
Q7TMI3 E3 ubiquitin-protein ligase UHRF23882e-036
Q96PU4 E3 ubiquitin-protein ligase UHRF23863e-036

TrEMBL top hits (Blast detail)Scoree value
Q8VYZ0 Putative transcription factor16322e-179
Q9FVS3 Transcription factor, putative16222e-178
Q9FKA7 At5g3955015882e-174
Q67XP0 Zinc finger-like protein15864e-174
B9SU90 Zinc finger protein, putative15811e-173

Arabidopsis top hits (Blast detail)Scoree value
AT1G57820.1 VIM1 (VARIANT IN METHYLATION 1); DNA binding / chromatin binding / double-stranded methylated DNA binding / histone binding / methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / ubiquitin-protein ligase16329e-182
AT1G57820.2 VIM1 (VARIANT IN METHYLATION 1); DNA binding / chromatin binding / double-stranded methylated DNA binding / histone binding / methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / ubiquitin-protein ligase16023e-178
AT5G39550.1 VIM3 (VARIANT IN METHYLATION 3); methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / protein binding / ubiquitin-protein ligase/ zinc ion binding15924e-177
AT1G66050.1 VIM2 (VARIANT IN METHYLATION 2); protein binding / ubiquitin-protein ligase/ zinc ion binding15782e-175
AT1G66040.1 VIM4 (VARIANT IN METHYLATION 4); protein binding / zinc ion binding15772e-175

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  33%
 
102  33%
 
111  17%
 
71  17%

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