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Information for unigene UN13558
| FASTA Sequence |
| Unigene ID: UN13558 | Length: 1236 |
SSR | | CATTACGAATGTGAGTAGACGAAGCTGATTCATTTAAAAAGTTTAGAACATTGAAAACTACACCAATTCTGTTTCTAGGCATTCAC
AAGCCTACACATAATAGGTTTGTCTATGATTGAATAACCCTAAAAATTCAGCATTAGTAGTAACATTTTTTCACATCTTTCAAGAG
TTCACCTCGGTTCTGTGCCAATGATAGGTTCAACGATTCCTCCTTTGATCCGCGGTCAAACCAACAACCTGTTAATCATGGGGGAT
TTTGGAAGACAATTCTGACATTAGATGAGTTGTGCCTTTTTTAGGTCGGACACAACTCCTCTGTCCTGGCTGCTCCTCTCGTTGTA
AACAACCTTATCAATGATTCCGTATTCAACAGCCTCACTGGGACTAAAATATTTTGGGCGTTTCATGTCAGCTTCAATCTGCTCCG
GGGATTTACCAATATGCTTTGAATACAGCTTGACCATTTCTGTCTTTATGTGATTGATTTCTTTCCTTGCGATTTCAACATCGGTT
GCTTGGCCTTGAAATCGAGCAATGGGCTGTTTTATCATTATAGTTGATGAGGGCAATGCAGAACGGTTTCCTTTCGCACCAGCAGT
CAGAAGCAAAGCAGCTTCACCCCAAGCATTCCCAACGCAAAGAGTAAAGATTGGTGGTTTGACATACCCCATGACATCATAAATTG
CAAAAGCCTCGGTATCATAGCCCAACTTCTCACCATTCTTGGTCGTCCCCGTGGAGTTAATGTAGAGGTAAATAGGCTTGTCCTCG
TCTTCATACTGAAGGTAAAGAAACTCGGCGAGTATCAACTCAGTGACTGAAGGCACAAGAGACATTCCCAAATATACAATTCTGTT
TTTGAACAAATACGATGCCAAATCAGGAGGAGGCTGTTCGTGTGCACTCCCTTTTGAAAATGGTATAACCATAGTGACAACTCCGC
GCTTAGGCTTCGAACTGGATATATTCAACGGATTAAGCGATTCGGAACGAAGCTTGGCGCCGCAGAAGTCACTAGAGATGCTTCCT
CCGGTGTACGGGGAGAGTAAGCCGTTCGAGAGAGAAGCTCTGAGAGAAGAAGAAGAAGAACATCTCGCTTTAGATCTCGGATTACG
TGTCGAAGACGGGATTATCGCTGATGTACGAGCTCGGAGCGTTGTGAAGCTCGTCGCAGTCGCTGCTACCTCCATTTTTTTCTCCC
TTTGTTGCAGAGAGAGAGAGAGAGAGACTCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002868088 hypothetical protein ARALYDRAFT_493172 [Arabidopsis lyrata subsp. lyrata] | 1478 | 1e-161 |
| NP_567521 ATP-dependent Clp protease proteolytic subunit-related protein 4 [Arabidopsis thaliana] | 1462 | 1e-159 |
| AAL91164 unknown protein [Arabidopsis thaliana] | 1459 | 2e-159 |
| XP_002329556 predicted protein [Populus trichocarpa] | 1163 | 5e-125 |
| ACX50407 ATP-dependent Clp protease [Eriobotrya japonica] | 1154 | 5e-124 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8LB10 ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic | 1462 | 4e-161 |
| Q9L4P4 Putative ATP-dependent Clp protease proteolytic subunit-like | 435 | 5e-042 |
| P74466 Putative ATP-dependent Clp protease proteolytic subunit-like | 424 | 1e-040 |
| A1JNN2 ATP-dependent Clp protease proteolytic subunit | 326 | 2e-029 |
| Q60107 ATP-dependent Clp protease proteolytic subunit | 326 | 2e-029 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A9PAS6 ATP-dependent Clp protease proteolytic subunit | 1163 | 3e-125 |
| D0EX73 ATP-dependent Clp protease proteolytic subunit | 1154 | 4e-124 |
| C6T8Y5 ATP-dependent Clp protease proteolytic subunit | 1147 | 2e-123 |
| B9SZ03 ATP-dependent Clp protease proteolytic subunit | 1100 | 6e-118 |
| Q0JNQ7 ATP-dependent Clp protease proteolytic subunit | 932 | 2e-098 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G17040.1 ATP-dependent Clp protease proteolytic subunit, putative | 1463 | 3e-162 |
| AT1G09130.1 ATP-dependent Clp protease proteolytic subunit, putative | 440 | 1e-043 |
| AT1G09130.2 ATP-dependent Clp protease proteolytic subunit, putative | 440 | 1e-043 |
| AT1G49970.1 CLPR1; serine-type endopeptidase | 422 | 1e-041 |
| AT5G23140.1 NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7); serine-type endopeptidase | 271 | 5e-024 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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