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Information for unigene UN13583

FASTA Sequence
Unigene ID: UN13583Length: 1665 SSR 
GGAAAACGAAAGTAGTGATTCATAGCCCGAGAGTCCCAATCGCTGCAAAGGAGCTACGCCGGGGAAGCTTCTAGGGTTTTTCTCTG
ATCATCTCCTCCTTCCCACCTGCTTCAGAAGGCGGTTTCTACTTCTAAGGAGTTGCTTGCACTGTTCTTCTTTGAATGGTTTCCTT
CCTAAGATGAAAGTCAAGGCTGCTGAGCATATTCTAAAAATCTGTTGAGCTGTTTAAAAGAGTGTGAACCAAAAATGGATGATGAT
AATGGGCTCGAGCTCAGCTTGGGTCTCTCTTGTGGAGGAGGTTCAGTTAAGGGTAACATTGCTAATAACGCTGGAACCTCCTCCTC
GGAGAAGCACATAGTAGAAGGAGGAGATAGAAGTGCTAAAGTGATTGATGACTTCAAGAACTTCCTTCATCCGACTTCTCAAAGAC
AAGGTGAGCCGAGTTCTGGTTCTCAGAGTCAGAGAAGTGATTCTGGTCAACAACAACAACAACCTCCACAGAATTTCTTCAATGAT
CTCTCCAAGGCTCCTCCTACCTCTGACGCTGAAGCTTCCACGAAACCTCTGTGGGTGGAGGATGAGACAACACGACAAGAAGCAGG
AAACAAAAGAAAGTTTGGGTTCCAGGGGATGAACGATGAGAAGAAGAAAGAGATAGACTCCTCCTCACGTGTTGTTGATCCGCACG
AGAAGAAGACAAAGCATCCCATGTTTCAAACGCTACTGATGAAGATCAACAGCTGAAAACGAGATGTTGCAGAATCTGAAGTAGGC
GGTGGCGGTTCTTCTTCCAATCTAGCTAAGGAGGTGGTTCGTCCTAACGCTGATACAAACGTCGTGGACAACTTAGCTGGTCAAAG
GAAGAACGGCCATGGCGCTGAAGAGTTTACTACAATGCGCAACATGAGTTACAACACCGTACCTTTCACTGTTCATCCACAGAAAG
CCGTCACTGGTTTACCTTACTCGGCATTGCTGGCCTTTCTCAATCTCCATTCGCTGCAAGAGGCCCATCAAACTCAGCTACGGCGA
AAGGCGAGGGAAAACAGCCTGTTGCAGAAGAAGGCTCATCAGAGGATGCATCAGAACGACCATCAGGAGACAACAACAACAACAGT
ACTGCTTTTTCTTTCGGCTTTTCTGCCATAAAACCTGGAATGGCAGCGGATGTGAAGTTTGGAGGATCTGGTGCACGTCCTAACCT
GCCCTGGGTCTCAACCACTGGTTCAGGCCCGCACGGTCGAACAATCTCGGGTGTTACATACCGGTACAATGCAAACCAGATCAAAA
TCGTTTGCGCTTGTCACGGCTCACACATGTCGCCGGAGGAGTTTGTCAGGCATGCAAGCGAGGAGTATGTTAGCCCTGAGTCTTCT
GTAGGAATGACGGCTGCCTCGGCTCATACCTGAAAAGTCGCCGGAGAAGTGTCTTATATCTTTGTAGACAAATGGAACAAGTGGTT
TGTAATGAGTTTCTTATGGGAAGGTGTACTCTTTAAGGCCAAAGTTTTATTGGAGCTTCCCACTATGTTAGTGTAATCTCGCTGTT
TCTTTTGTTCTTCTTTTCAGCTTTTGTCACTTCACTTTTGTGTATTACCATTTAGTTTTGTATGATTCTCTCTATTTTGTTTTTGG
GTTCAAAACTTCAAATAAATATTCTGAGAAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_194620 AFP-like protein 2 [Arabidopsis thaliana]7864e-081
AAK96863 putative protein [Arabidopsis thaliana]7821e-080
XP_002867433 hypothetical protein ARALYDRAFT_491865 [Arabidopsis lyrata subsp. lyrata]7668e-079
XP_002514251 conserved hypothetical protein [Ricinus communis]3813e-034
Q53HY2 RecName: Full=Ninja-family protein mc4103511e-030

Swiss-Prot top hits (Blast detail)Scoree value
Q9SV55 AFP homolog 27862e-082
Q53HY2 Ninja-family protein mc4103514e-032
B4FXN6 Ninja-family protein 73282e-029
B6TCE8 Ninja-family protein 83282e-029
Q6AT41 Ninja-family protein Os05g05588003254e-029

TrEMBL top hits (Blast detail)Scoree value
B9RKK7 Putative uncharacterized protein3812e-034
B9ILR7 Predicted protein3509e-031
B9NB67 Predicted protein3436e-030
B9NF37 Predicted protein3373e-029
C5YVG5 Putative uncharacterized protein Sb09g0281503302e-028

Arabidopsis top hits (Blast detail)Scoree value
AT4G28910.2 LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G07250.1); Has 223 Blast hits to 204 proteins in 56 species: Archae - 2; Bacteria - 11; Metazoa - 48; Fungi - 32; Plants - 89; Viruses - 3; Other Eukaryotes - 38 (source: NCBI BLink).7861e-083
AT4G28910.1 LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G07250.1); Has 223 Blast hits to 204 proteins in 56 species: Archae - 2; Bacteria - 11; Metazoa - 48; Fungi - 32; Plants - 89; Viruses - 3; Other Eukaryotes - 38 (source: NCBI BLink).7861e-083
AT4G28910.3 LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G07250.1); Has 223 Blast hits to 204 proteins in 56 species: Archae - 2; Bacteria - 11; Metazoa - 48; Fungi - 32; Plants - 89; Viruses - 3; Other Eukaryotes - 38 (source: NCBI BLink).7861e-083
AT3G29575.1 AFP3 (ABI FIVE BINDING PROTEIN 3)1632e-011
AT3G29575.3 AFP3 (ABI FIVE BINDING PROTEIN 3)1632e-011

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
113  50%
 
92  33%
 
71  17%

Unigene MembersMember information