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Information for unigene UN13596
| FASTA Sequence |
| Unigene ID: UN13596 | Length: 1009 |
| SNP | GGATATCCGAGGACAACAACAACAGCACTTCGAGAAAGAGGCAACGTTCTCAGACCGAAGGCACTGCGACACTGCTGGATCTGGAT
TTTACCGACTGTCCCATCTGCTTTAATCTTCTCACCATTCCCATCTTCCAGTGTGATAATGGGCATATGGCATGCTCTACTTGCTG
CGAAAAGTTAAGCCAGAAGTGCGCAACATGCTCTTTACCCACTCTTTCCCGCAACAGAGCGATGGAGCGTGTTCTTGAACTACTTA
GAGTTCGATGTCCGAATGCTGGTTGCTCCATGGTCGTCTCTTGTTCTGGAACATCAGCACATGTGGATCACTGTCCATTCACCCAA
CGCACTTGCCCTTTTAGCAGCTGTGACTTTACTTGCTCCTTCAAGGATTTATACAAACACAGCCTTGCTAAACACAGCATTGCGGC
ACCACACTTGGCTAAACTTGGCGTTTCCTTCTCCTCGCTCATGTTTAAATGTGGAACGCTCGTGCGTATTCATCTCACAGCGAATA
AGAGGATCATTCTCAAGGAACAGACTACTACAAAAGGAGAAGGAGAAATTGTGGTTGTTGAAGGGTTCGATAGGCCAGACGGTCGG
ATGTTCTATGCCTGCTGTATTGGACCAGGAACAGACAAGTTCTCCTACCAACTCAAGCTATCTTTAGCTTCCGGTGATGACTTGTT
GTATGACTCAAACCTCCAAAGAGTTCGTGAAGTGAGCAATGAACCACCACTTGCGAATTTTATGTTGGTTCCTTCATGTATGTTGC
CTTACCGCATATGTTATATATGCATCAAGCGGAAGACTAACTAGGATCATCAAGACGCTACTACTTCATCAGACGTCGTCAGCGAC
ACTGATGCTGTTAACTAATGTATGTTTTTGTAGGAGCCGAAAAATTGGCCTGACATGTTTGTAATGTAATCCCTATCTAATGTGTG
ATACTGATCTAGGTTTAAATTCTACTAATATGCGTCCTGCAAGCAAACCTTATCTAATTCGAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002868825 hypothetical protein ARALYDRAFT_356210 [Arabidopsis lyrata subsp. lyrata] | 438 | 4e-041 |
| XP_002870580 hypothetical protein ARALYDRAFT_915957 [Arabidopsis lyrata subsp. lyrata] | 435 | 9e-041 |
| NP_198607 putative E3 ubiquitin-protein ligase SINA-like 9 [Arabidopsis thaliana] | 411 | 5e-038 |
| NP_198603 putative E3 ubiquitin-protein ligase SINA-like 6 [Arabidopsis thaliana] | 396 | 3e-036 |
| XP_002870581 hypothetical protein ARALYDRAFT_915958 [Arabidopsis lyrata subsp. lyrata] | 359 | 6e-032 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9FKD5 Putative E3 ubiquitin-protein ligase SINA-like 9 | 411 | 2e-039 |
| Q9FKD9 Putative E3 ubiquitin-protein ligase SINA-like 6 | 396 | 1e-037 |
| Q9FM14 E3 ubiquitin-protein ligase SINA-like 11 | 347 | 6e-032 |
| Q9C6H2 E3 ubiquitin-protein ligase SINA-like 3 | 338 | 7e-031 |
| Q9FKD7 E3 ubiquitin-protein ligase SINA-like 7 | 333 | 3e-030 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9M4F3 SIAH1 protein | 307 | 4e-026 |
| Q93YL2 SIAH1 protein | 302 | 2e-025 |
| B9MX56 Predicted protein | 294 | 1e-024 |
| B9T323 Ubiquitin-protein ligase, putative | 294 | 1e-024 |
| A2Q423 Ubiquitin; TRAF-like | 254 | 6e-020 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G37910.1 seven in absentia (SINA) family protein | 411 | 2e-040 |
| AT5G37870.1 seven in absentia (SINA) family protein | 396 | 1e-038 |
| AT5G62800.1 seven in absentia (SINA) family protein | 347 | 6e-033 |
| AT1G66630.1 seven in absentia (SINA) family protein | 338 | 6e-032 |
| AT5G37890.1 seven in absentia (SINA) protein, putative | 333 | 2e-031 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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