RadishBase

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Information for unigene UN13619

FASTA Sequence

Unigene ID: UN13619	Length: 936	SSR	SNP
AAACTCTAAAAGCGGAAAGTTCCATAACATAAAAATGAAACACAGAGTACCAACAGTTTACATGATGATGATGACCCGATACCAGT TCAAGGTCTTATTATAACCAGAAACAAAGTCAGACACAGACTCAGCTGTATCTAAAGAGAATCAAGCAAACACAACAGCAACATCC AAAGATAAATGCCTTAGCTTTTTATTTAGTAAGATAAAGCTAAGCAGAACAAGACTATCCGTCATGGGAGAGTGTTTTAGTCATCG TCTTCATCACGACGCCTCTGGTGGTGGTGATGCTGGTAACGATGCTGTTTCTTCTCCTCATCATCATCATCAGAGTTATTGCCACC ATATTTCTTGCGGCCATAGCTCCCTTCCTCATCATCACCAGAACGGTTCCTGCGCCCCTCATCATCATCATCATCATCATTGCGAC GGCCATAGCTAGGCTTCCTGTAACTCCCTTCCTCTTGTTCCTCAGATCTTCCATAGCTAGGCTTCCTATAGCCTCCCTCTTCCTCT TCCTCAGATCTTCCGTAGCTGCTGGGCTTTATGTAGCTCTCAACCTGATCCTCAGATCTCCCATAGCTAGGCTTCCTGTAACCTCC TCCTTCTTCCTCCTCAGACCTCCCATAGCTAGGCTTACGCTCATACTCGGTCTCCGTCTCCGATCTCCCACCATATCCGGATTCAG GCCTCCTGCCATACTCAACCTCCGTTCTTCCACCGTAACCACCAGACTCAGACTCCGATCTGCCACCGTAACCGCCAGATTCGACC TCCGATCTCCCACCGTATCCAGATTCAGGTCTCCGGCCATACTCAACCTCCGTTCTTCCACCGTAACCACCAGATTCAACCTCCGA TCTACCTCCATATCCACCAGATCCGTAACTCTGCTCAGGTCTCCGTCCATACTCCGTCTCCGTCGCTCCGCCGTAC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002870774 predicted protein [Arabidopsis lyrata subsp. lyrata]	720	7e-074
NP_568565 uncharacterized protein [Arabidopsis thaliana]	693	1e-070
AAN60241 unknown [Arabidopsis thaliana]	693	1e-070
AAM97009 putative protein [Arabidopsis thaliana]	357	9e-032
XP_001770325 predicted protein [Physcomitrella patens subsp. patens]	281	6e-023

Swiss-Prot top hits (Blast detail)	Score	e value
Q9FKA5 Uncharacterized protein At5g39570	693	4e-072
Q6RHW0 Keratin, type I cytoskeletal 9	165	7e-011
Q28181 Cyclic nucleotide-gated cation channel beta-1	153	2e-009
Q9LYJ9 DEAD-box ATP-dependent RNA helicase 46	135	2e-007
P04929 Histidine-rich glycoprotein	131	6e-007

TrEMBL top hits (Blast detail)	Score	e value
B9SVI7 Putative uncharacterized protein	410	4e-038
Q8L7C5 Putative uncharacterized protein At5g39570	381	1e-034
B9N9R7 Predicted protein	350	4e-031
A9SVG4 Predicted protein	281	4e-023
Q2N2B2 RPGR ORF15 isoform (Fragment)	200	1e-013

Arabidopsis top hits (Blast detail)	Score	e value
AT5G39570.1 unknown protein	381	6e-037
AT3G29075.1 glycine-rich protein	240	1e-020
AT3G07030.1 nucleic acid binding	167	4e-012
AT5G14610.1 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / protein binding	136	1e-008
AT5G40490.1 RNA recognition motif (RRM)-containing protein	128	1e-007

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	3			20%


11	7			47%


6	3			20%


9	2			13%

Unigene Members	Member information