Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN13628

FASTA Sequence
Unigene ID: UN13628Length: 1163 SSR 
GGGTGTGTGTGTGTTTATAAATCTGAGGTAAGAGAGAAGTGAGAAAGTTTAGGTTAAAGCTTCCGCGGAGCGCGGCGAACTATCTG
ATCACGAGACTTGAAGATGCCTCGCTACGATGATCGTTACAGCAGCAATGACCGATACGGCGGCGCACGTCTCTATGTGGGACACC
TCTCCTCTCGAACAAGGGAACGCGATCTTGAACACCTCTTCAGCAAATACGGAAGAATTCGAGATTTGGACATGAAGCGAGACTAT
GCCTTCATTGAATTCAGTGATCCTCGAGATGCTGATGATGCGAGGTACAGACTGGACGGAAGAGACTTTGATGGAAGCCGTATCAC
TGTGGAGTTTGCCAGAGGGACACCTCGTGGTTCCCGAGAATTTTCCTCGAGCAGAGGCCCTCCTCCAGGAAGTGGTCGTTGCTTCA
ACTGTGGTCTTGAAGGACACTGGGCTCGAGATTGCTCTGCTGGTGACTGGAAGAACAAATGTTATCGTTGTGGAGATAGGGGTCAC
ATCGAGAGGAACTGCAAGAACAGTCCTAAGAAGCTCAGGCGGGACGCAAGTTACTCAAGATCGCCGGTTCGGTCTCGGTCTAGGTC
TCCTCGTCGCAGAAGAAGAAGCCCCAGCAGAAGCTATAGCCGCGACCGTAGCTACAGTCGCTCCAGGTCACCGGTTAGGAAGGAAA
AGGATCATAGTCCTGAAGCTGCAAGGAGCAGAAGCCCTGAAGCTGCAAGGAGCAGAAGCCCTGAACTAATGGCGGACAACTCTCCT
CCATCCAAAGATAGGAAGCGAAGTTTGACTCCTGAAGAAGGCAGCCCAATGCGTGAGAAGAACAGCCCCAAGGAGAATGAATTGAG
CCCGAGAGGAAACGATGATGGCGGTATTGGAACCAATGAGCAAGACCGAAGTCCTAGTCCTAGTCCTAGAGAAGACCGTAGCCCTG
TGGAGGATGTTGATGAGCAGTGAAGATTGGGGAAACAACTGTTGGTGATTGCTTAAGAGTGTCCTCATAAAAGACTGAAATGGATT
CTGTTATTTTTAGACAACTGCAATGGATTCTGTTATTTTTCTTTAGTGTTTGGAGTCTTTGGTTTCTACTTCGACTGTTTCATTTT
CCTGTAGACGAAAGCTTAAGAAAAGTATAATAAAACGACTTTTTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_850280 arginine/serine-rich zinc knuckle-containing protein 33 [Arabidopsis thaliana]8992e-094
BAD44429 unknown protein [Arabidopsis thaliana]8921e-093
CAC03605 splicing factor RSZ33 [Arabidopsis thaliana]8883e-093
XP_002877922 hypothetical protein ARALYDRAFT_323893 [Arabidopsis lyrata subsp. lyrata]8704e-091
NP_190918 RNA recognition motif and CCHC-type zinc finger domain-containing protein [Arabidopsis thaliana]8633e-090

Swiss-Prot top hits (Blast detail)Scoree value
Q13243 Splicing factor, arginine/serine-rich 52383e-019
O35326 Splicing factor, arginine/serine-rich 52383e-019
Q09167 Splicing factor, arginine/serine-rich 52383e-019
Q23120 Probable splicing factor, arginine/serine-rich 22374e-019
Q3T106 Splicing factor, arginine/serine-rich 72312e-018

TrEMBL top hits (Blast detail)Scoree value
Q8VYA5 Putative uncharacterized protein At2g373408991e-094
Q67Y02 Putative uncharacterized protein At2g373408928e-094
Q9FYA7 Splicing factor RSZ338882e-093
Q9FYB7 AT3G53500 protein8632e-090
B9SGV2 Arginine/serine-rich splicing factor, putative8604e-090

Arabidopsis top hits (Blast detail)Scoree value
AT2G37340.1 RSZ33; nucleic acid binding / nucleotide binding / zinc ion binding8997e-097
AT3G53500.2 zinc knuckle (CCHC-type) family protein8631e-092
AT2G37340.3 RSZ33; nucleic acid binding / nucleotide binding / zinc ion binding7421e-078
AT3G53500.1 zinc knuckle (CCHC-type) family protein7114e-075
AT2G37340.2 RSZ33; nucleic acid binding / zinc ion binding7062e-074

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
86  86%
 
91  14%

Unigene MembersMember information