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Information for unigene UN13628
FASTA Sequence |
Unigene ID: UN13628 | Length: 1163 |
SSR | | GGGTGTGTGTGTGTTTATAAATCTGAGGTAAGAGAGAAGTGAGAAAGTTTAGGTTAAAGCTTCCGCGGAGCGCGGCGAACTATCTG
ATCACGAGACTTGAAGATGCCTCGCTACGATGATCGTTACAGCAGCAATGACCGATACGGCGGCGCACGTCTCTATGTGGGACACC
TCTCCTCTCGAACAAGGGAACGCGATCTTGAACACCTCTTCAGCAAATACGGAAGAATTCGAGATTTGGACATGAAGCGAGACTAT
GCCTTCATTGAATTCAGTGATCCTCGAGATGCTGATGATGCGAGGTACAGACTGGACGGAAGAGACTTTGATGGAAGCCGTATCAC
TGTGGAGTTTGCCAGAGGGACACCTCGTGGTTCCCGAGAATTTTCCTCGAGCAGAGGCCCTCCTCCAGGAAGTGGTCGTTGCTTCA
ACTGTGGTCTTGAAGGACACTGGGCTCGAGATTGCTCTGCTGGTGACTGGAAGAACAAATGTTATCGTTGTGGAGATAGGGGTCAC
ATCGAGAGGAACTGCAAGAACAGTCCTAAGAAGCTCAGGCGGGACGCAAGTTACTCAAGATCGCCGGTTCGGTCTCGGTCTAGGTC
TCCTCGTCGCAGAAGAAGAAGCCCCAGCAGAAGCTATAGCCGCGACCGTAGCTACAGTCGCTCCAGGTCACCGGTTAGGAAGGAAA
AGGATCATAGTCCTGAAGCTGCAAGGAGCAGAAGCCCTGAAGCTGCAAGGAGCAGAAGCCCTGAACTAATGGCGGACAACTCTCCT
CCATCCAAAGATAGGAAGCGAAGTTTGACTCCTGAAGAAGGCAGCCCAATGCGTGAGAAGAACAGCCCCAAGGAGAATGAATTGAG
CCCGAGAGGAAACGATGATGGCGGTATTGGAACCAATGAGCAAGACCGAAGTCCTAGTCCTAGTCCTAGAGAAGACCGTAGCCCTG
TGGAGGATGTTGATGAGCAGTGAAGATTGGGGAAACAACTGTTGGTGATTGCTTAAGAGTGTCCTCATAAAAGACTGAAATGGATT
CTGTTATTTTTAGACAACTGCAATGGATTCTGTTATTTTTCTTTAGTGTTTGGAGTCTTTGGTTTCTACTTCGACTGTTTCATTTT
CCTGTAGACGAAAGCTTAAGAAAAGTATAATAAAACGACTTTTTG
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GenBank top hits (Blast detail) | Score | e value |
NP_850280 arginine/serine-rich zinc knuckle-containing protein 33 [Arabidopsis thaliana] | 899 | 2e-094 |
BAD44429 unknown protein [Arabidopsis thaliana] | 892 | 1e-093 |
CAC03605 splicing factor RSZ33 [Arabidopsis thaliana] | 888 | 3e-093 |
XP_002877922 hypothetical protein ARALYDRAFT_323893 [Arabidopsis lyrata subsp. lyrata] | 870 | 4e-091 |
NP_190918 RNA recognition motif and CCHC-type zinc finger domain-containing protein [Arabidopsis thaliana] | 863 | 3e-090 |
Swiss-Prot top hits (Blast detail) | Score | e value |
Q13243 Splicing factor, arginine/serine-rich 5 | 238 | 3e-019 |
O35326 Splicing factor, arginine/serine-rich 5 | 238 | 3e-019 |
Q09167 Splicing factor, arginine/serine-rich 5 | 238 | 3e-019 |
Q23120 Probable splicing factor, arginine/serine-rich 2 | 237 | 4e-019 |
Q3T106 Splicing factor, arginine/serine-rich 7 | 231 | 2e-018 |
TrEMBL top hits (Blast detail) | Score | e value |
Q8VYA5 Putative uncharacterized protein At2g37340 | 899 | 1e-094 |
Q67Y02 Putative uncharacterized protein At2g37340 | 892 | 8e-094 |
Q9FYA7 Splicing factor RSZ33 | 888 | 2e-093 |
Q9FYB7 AT3G53500 protein | 863 | 2e-090 |
B9SGV2 Arginine/serine-rich splicing factor, putative | 860 | 4e-090 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT2G37340.1 RSZ33; nucleic acid binding / nucleotide binding / zinc ion binding | 899 | 7e-097 |
AT3G53500.2 zinc knuckle (CCHC-type) family protein | 863 | 1e-092 |
AT2G37340.3 RSZ33; nucleic acid binding / nucleotide binding / zinc ion binding | 742 | 1e-078 |
AT3G53500.1 zinc knuckle (CCHC-type) family protein | 711 | 4e-075 |
AT2G37340.2 RSZ33; nucleic acid binding / zinc ion binding | 706 | 2e-074 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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