Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN13646

FASTA Sequence
Unigene ID: UN13646Length: 834 SSRSNP
ATCCTCAACTTCTTAAACTTTTATATCTCAAAATACAAATGGACAATAGTACAAACCAAATAAGAAAAAAAAATCTAACCAACTCG
GCATATATATATTACATTTACGGAGACCATTATATATATTATTTATATATGAGATGCCGCAAAATATTTCTTAAAACTTAAATTAA
TACTTCTTAGCAAATGCATTAATCAAGGACAGGGCGTTGCTAGTTTCGTGACCCACGTTAACAATTCTAGCTCGAACCGAGTTCTT
GATCCTTCCATCCATGACCCGACCCGAGAAACCATCGGAGCAAGTGTTCTCATCTGTCAAAGCCGCACTAGTCCAAGTCTGAGCAT
TACTCATGTGGAACGCAAACTGATCTTGATTTTTGGCACTCCCACATAGCTTCATCTCTTGGACCGACTTGGTCAAACGGTCAATG
GTATCGTTGATCTCCTCAACGCAGTCCTTGATGGCTTCGACCTCGCGCTTCTTAAGGCCCTTGAAACGCGTCAGACGCGAGACGAA
GAGTTTGGTGGATTGGGCTCGGCTCAGGGTAACGGCTAGAGCGGTCTCGGCTAAGCGTTTAGGGCTTGTTTGTATGGCGTTTGCGT
AGGCTGAGAGGGAGTGGAAGCACACGGCTGGGTATGTGGTGGTTTTGCAAGAGGATTGGATGAAGTTCACGGCTTTGTTGGAGGCT
CCAGCCCGTGAGGCTGCGGTGGCGGCAGTGAGCGCCGGCGAGAAGAAGAAGAAGATTGAGAGGATTAGAAAGAGAGTTTGGTTTAG
TTTTGCCATTGGTGTTTCTTGTAAGAAAGCTAGATAGAAAGTGAAAGAATTGAGTGTCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002864786 hypothetical protein ARALYDRAFT_496412 [Arabidopsis lyrata subsp. lyrata]8944e-094
AAM67138 ripening-related protein-like [Arabidopsis thaliana]8811e-092
NP_201041 invertase/pectin methylesterase inhibitor family protein / DC 1.2-like protein [Arabidopsis thaliana]8792e-092
XP_002875836 invertase/pectin methylesterase inhibitor family protein [Arabidopsis lyrata subsp. lyrata]7206e-074
BAB17684 DC 1.2 homolog [Arabidopsis thaliana]7171e-073

Swiss-Prot top hits (Blast detail)Scoree value
P17407 21 kDa protein5017e-050
O04886 Pectinesterase 12265e-018
O49006 Pectinesterase/pectinesterase inhibitor 32265e-018
P83948 Pectinesterase 32265e-018
Q42534 Pectinesterase 22249e-018

TrEMBL top hits (Blast detail)Scoree value
Q8L8T0 Ripening-related protein-like8819e-093
Q9LVA4 Ripening-related protein-like8791e-092
Q9FXM2 DC 1.2 homolog (Fragment)7179e-074
Q9STY5 Putative uncharacterized protein T21L8.1307081e-072
A9PDL3 Predicted protein5645e-056

Arabidopsis top hits (Blast detail)Scoree value
AT5G62350.1 invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)8807e-095
AT3G47380.1 invertase/pectin methylesterase inhibitor family protein7095e-075
AT4G25260.1 invertase/pectin methylesterase inhibitor family protein4882e-049
AT4G12390.1 PME1 (PECTIN METHYLESTERASE INHIBITOR 1); enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor4594e-046
AT1G62770.1 invertase/pectin methylesterase inhibitor family protein4372e-043

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
181  8%
 
64  33%
 
75  42%
 
91  8%
 
101  8%

Unigene MembersMember information