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Information for unigene UN13647
| FASTA Sequence |
| Unigene ID: UN13647 | Length: 1828 |
SSR | SNP | GTGTAAGGTACTGAAAATTGATTTGATGGTAAGAGTAGCTTGTGCTCTCAAAGAGGAGCGTTTCACTTTTCCATTACATTAGAGAC
TCAAAGCAAATAGTTTATAGTAAAAAGCATATAAGTATACCCCCAATGCCTTTTAAGTCTTTAACTTCAAACAATGATCCAATCAA
AGTTGAAGATTACAAGATAGAAGAGCCCAGTTCCTTCCAACGCTGCCCCATGGCTTGGTTGCAACCTCTCTACAGGTACTTGGTCA
TACCCCGACCTTCCACGCTAACCGTGGTGGCTTGCAAACGCTTCTTCTTTGGTCCTTTTAGCTGCTGCAGTTTCTTGTTCATCTTC
ACTCGGCGCTGGTCCTGAGAAACCTGTTTAGCACGGGCTCTGACCTCATCTGGGTCAATCTTGGACTGAGGACGAATCACAAAGTC
CATTGGAGTTGCTTCTGGTCTCATGGTCATGTTCCTGTACGAATCTCCCCTCGAACTCTGGCCCGAAGTCAGACCTGATTTTCGTT
GCCGAATATCTAAGTCAAAGTCACCATCCCTGGACTCCATTGTCGAAGCTTTGTTGACAGGTTTCTTCACTGGTGGTCTTCTATAG
GGAGCCCTATCTTCATCAAGAGTTCTCATGTCTTCAAACCTTGTGCTCTTGTTGAAAATTGGACGAGACCATTTATCAACCAAGTC
CTTAGCAAGTCTTCTGTTTGAAGTAGTTTCCTCATCGGACTTCGATAAGAACATAATGACCTTTCCAAGCCCGCTCTTTTTCAATT
GCTCCCTCCGATCAAACTGCTCCAGGTCAATTGGAAAATCAGTAAGAACCCTCAGAATAGCTGCACGAATGTTTATATTTGGCAAG
CTTCCATCAGGAAGAGGCTCAAGCCAGTTCTTCAGCAGAGTTAGAACTCCATGGTCCAAGAATTCTGTTTGAAGCTGCTTCTTTCC
AAGTACATTGGTAAGAAGGGAAAGTTTCTTAAGCTTGTTGATAGCAGGCTTCCCATGTCTGTTAAGATCTGCGTCTTCCTCAGCAG
TGACCTCAAGCTCAGCCATCACATTCTCAACCAAGAGAGCGATTTCCGCAGGATTCCTTTCAGCCTTCTTCTTTTTCTTCCCCATT
TTGAAAAGGTTATTAACCTCATCATCATCCTCTCCCTCCTCTGCCTGAGGATAGTGAGTTGGAGAGCGGTCTCCCCCATCACCTCC
ATACCTCTCAGAAGGATCCACACCAGTATCATCAATGAAATTATCGTCATCCATAGTCCTAACACCTTCTTCATCATTCTCAGGGT
TATTATCTGCAATAGATTTCCACATCTCATCAATCTCTTCAGACTTCCTCTCACCGCGGCTTGGGAGCTTATACCTCTTCTCCTTC
CCACCGCCACCGCTACTTCTCTCTTTCTCCTTCTTCCTCTTCCTACCAACCTTATCATCATACTCTGAACCTCCTCCTCCTCCTCT
TCCTTCCATGTACACATCAAACACAGCATCCTCCACATCCTCATCAATAAGCTCAGGAACATTGATAGTCTGCCTATCACTAGACC
CTTTCTTCACCAACCGTTTCCTTGGTTTCACTTTATCGTTGTCGTCGTAAAGAGGCGTTTGTGAACCTTCACCTTCCCAGTCTCCT
ATATCATCGGCTAAGTTATCTTCAAAATCCTCAAGTGGCTCACGATCGTCTCCGAAGTCATCATCCAAATCCACCAGCGGCTCCCC
ATCTACATCACGGTACGGATCATCTTCGAAACCCATATCTGCTTCGTTTCCAGAAAACGATTCAAGGGAGATGATGATCTCGATTA
CTGCTGACCTTTTCGAGTTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002893702 hypothetical protein ARALYDRAFT_473395 [Arabidopsis lyrata subsp. lyrata] | 2259 | 6e-252 |
| NP_174492 Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] | 2245 | 3e-250 |
| NP_001185126 Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] | 2092 | 1e-232 |
| AAG23443 unknown protein [Arabidopsis thaliana] | 1866 | 2e-206 |
| XP_002519849 Transcription factor IWS1, putative [Ricinus communis] | 1633 | 2e-179 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q6DE96 Protein IWS1 homolog A | 361 | 3e-033 |
| Q8C1D8 Protein IWS1 homolog | 339 | 1e-030 |
| Q3SWT4 Protein IWS1 homolog | 327 | 3e-029 |
| Q96ST2 Protein IWS1 homolog | 325 | 5e-029 |
| Q505H7 Protein IWS1 homolog | 311 | 2e-027 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FVQ8 Putative uncharacterized protein F3C3.8 | 1881 | 3e-208 |
| B9S1I4 Transcription factor IWS1, putative | 1664 | 4e-183 |
| A5BWS3 Putative uncharacterized protein | 1567 | 8e-172 |
| B9GZK2 Predicted protein (Fragment) | 1403 | 8e-153 |
| B9MU81 Predicted protein | 1392 | 2e-151 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G32130.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TFIIS N-terminal (InterPro:IPR017923), IWS1, C-terminal (InterPro:IPR008654); BEST Arabidopsis thaliana protein match is: IWS1 C-terminus family protein (TAIR:AT4G19000.1); Has 907 Blast hits to 871 proteins in 182 species: Archae - 4; Bacteria - 14; Metazoa - 417; Fungi - 195; Plants - 42; Viruses - 8; Other Eukaryotes - 227 (source: NCBI BLink). | 2261 | 1e-254 |
| AT4G19000.1 IWS1 C-terminus family protein | 626 | 5e-065 |
| AT1G62760.1 invertase/pectin methylesterase inhibitor family protein | 116 | 7e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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