RadishBase

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Information for unigene UN13657

FASTA Sequence

Unigene ID: UN13657	Length: 1481	SSR
AAAACTCTTCACTTCTTACCTCCCAGCTCAGCTAAACCAAACGTCATCAATCTGAAGCAACAATCTTACGGAGCAATAACACAGAC CCAGTTCATGTTGCGTCGTCAAGAAAGACGATTTCTTTCGATAAACTGCTCAAGCAGTGGCAACAACAACGGCAGTGAAGAGAAGG TTTTTCAGCCGTTGGATGGAGTGGAGATAAGGTTCAGACGAGGGTCAAGAAGGAGAATGAGGGAGGAAGGTTCAGGAGAAGGGCAA AACGGGAAGAAAGCAGAGAAAAGTGTTCAGAAGCCGTGGGAAGAGATGACGTTGAACGAGAAAGCGTTGGAGCTTTATGTCGGAGA GAAAGGTTTGTTGTTTTGGCTGAACAAATTGGCTTATGCTTCAATCTACATTGTGATTGGTGGTTGGATTTTTTTCCGGTTTGTTG GACCGGCTTTGAATCTTTATCAGCTTTATACGCCTCCTCTTGATCCTAAAAACATCTTGAAGGGCTAAGCAAGCTTTTAGCTTTTC TGTGTTATAAAAACATTTTGAAGGCTTATATTCATGCCAGTTTCGAGTAATGTGTACCCCAAATCAAACAAGGTTGTAATGAGAGT GAAAGAACACTCTTTTTGATTCTTTAAGATTGTGCTGAAGTTATGGTCTGCTCAATGATATCTCGTTTAGTCTTGCACCTATTGCA CTCTGATCGGGATGCATAATTGTGATTCTTGCAGTTTGTGCACATCCAGTCTCCATCACGCCATTGTTTTGCTCCGTATCCGAATA AAGCAGGTGTTAACTGTTGCTGTAAAAACGGGAGAGGAAGTTGCCAGTTTGAGATACTGCCTGAGGATATACCAGGAAAAGATGCA TATAACGATGACTGTGGTTGCATGCTTGTATATCCTTGATTCAATCTTTTGCTATCCCATTCATGAGCCAACACTTCTGATGCTAA TCTCTTCGTTCCAAGTGCTAGTGGAGCTGTTTCATTGCACTTTTTGCACTGTATACGAGAGGAATAGTTGTGAAACCCACAAGTGC AGATCCAGTCACCGCTCCTCCACTCTTTAACAGCCGAAACTTGATTTGCTGGATCAAGTCCACGGGTGGTGAAGTAACTGAGATAG GAAGCTGCTCCAGGGATAGCGAGTGCTGACAAAGCTGCTACTTCCTTTGGCTGTCCGCACTTTTTGCACTTTTCTCGTGATGCATA ATTGTTGTTAGTGCAACCAGTGCAGATCCAATCACCGACACGAGGAAGCCACTTGGAGTTGTGAGAGGTATTGTTGTCCATGAAAA GACGAGGCTGCTTGCATCTGTTGCAGAATGATCGAAACGCGTAGTTCCTGTTACTGCAACCTAAACACTCCCAATCTCCTTCTCTT CCATCTTCCATCTCTCCTGAACTCTTCTTCTCCGCCTCCTCCTCCTCCTCCTCTCGGAAGCTTCAGTCTCCGGCGACGAATCTCCG GATGAATTGAAGAAAGTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002886140 zinc finger (Ran-binding) family protein [Arabidopsis lyrata subsp. lyrata]	711	2e-072
NP_179388 zinc finger (Ran-binding) domain-containing protein [Arabidopsis thaliana]	703	1e-071
NP_565430 uncharacterized protein [Arabidopsis thaliana]	606	2e-060
AAM63014 unknown [Arabidopsis thaliana]	600	1e-059
XP_002884092 hypothetical protein ARALYDRAFT_900152 [Arabidopsis lyrata subsp. lyrata]	599	2e-059

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
Q8S8K1 At2g17975	703	9e-072
Q8S8K0 Expressed protein	606	2e-060
Q8LDU3 Putative uncharacterized protein	600	8e-060
B9MXH1 Predicted protein	438	5e-041
B9SXL9 Putative uncharacterized protein	438	5e-041

Arabidopsis top hits (Blast detail)	Score	e value
AT2G17975.1 zinc finger (Ran-binding) family protein	703	5e-074
AT2G17972.1 unknown protein	608	5e-063
AT1G48570.1 zinc finger (Ran-binding) family protein	127	3e-007
AT5G25490.1 zinc finger (Ran-binding) family protein	115	7e-006

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	2			40%


12	1			20%


7	2			40%

Unigene Members	Member information