RadishBase

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Information for unigene UN13664

FASTA Sequence

Unigene ID:UN13664

Length: 766

GGATCTAATCCCACCGCATATTCTCTCTCTCTCAAAAAAAGCTAAAATGTGGCGATTCTCTGTTTCGACGCTGCTCTTCTCGTATC
TGGCCGTTACTTTCCTGTCCATCTCTTCATCTTCCTTGGGTGATTCGGAGGCGACATGTTCTGGAATAGTCCCGTTGCCGAACCGG
AACGATAAGATATCGATATAACAGAGTTTGGCGGCGTGGGAGACGGCAGGACGGTGAACACGAACGCCTTTTAGGAAGCGATTTAT
AGAATACAGCACCTTAAGAGGAGAGGAGGCACGCTCCTGTACATACCTCCGGGAGTTTTTCTCACGGAGAGCTTCAATCTCACCAG
CCATATGACTCTCTTCTTGGCTAAAGGCGCTGTCCTTAAAGCTGTTCAGGATACAGGGAACTGGCCATTGATTGATCCTTTGCCAT
CTTATGGAAGAGGGAGGGAGTTACCAGGGGCACGGTATATGAGTTTTATTCATGGCGATGGCCTTCGTGATGTAGTCATCACTGGA
GAAAACGGGACAATAGACGGTCAAGGAGAAGTGTGGTGGAACATGTGGCGCAGTAGAACTCTAAAGTTCACTAGACCGAATCTAAT
CGAGCTCAAAAACTCTAAGGAGATCATAATTTCCAATGTTGTTTTCCAGGATTCACCCTTCTGGAACATTCATCCTGTGTATTGCA
GGTATATATTGTGAAGTTTGGAGGAAACCAAAGTAGTGTAATAGTTTCTCTCATTTTATTAACTTAGCCAATAGACTT

Annotation(GO term)

GenBank top hits (Blast detail)	Score	E value
NP_194113 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana]	832	5e-087
ACC91250 glycoside hydrolase family 28 protein [Arabidopsis halleri]	827	2e-086
XP_002867688 glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata]	825	3e-086
CBI34471 unnamed protein product [Vitis vinifera]	779	7e-081
XP_002304552 predicted protein [Populus trichocarpa]	769	1e-079

Swiss-Prot top hits (Blast detail)	Score	E value
A7PZL3 Probable polygalacturonase	503	3e-050

TrEMBL top hits (Blast detail)	Score	E value
Q9SUP5 Putative polygalacturonase	832	4e-087
B2WS78 Glycoside hydrolase family 28 protein	827	1e-086
B9GXH4 Predicted protein	769	7e-080
B9RCR5 Polygalacturonase, putative	768	9e-080
Q6EN36 Os02g0256100 protein	701	5e-072

Arabidopsis top hits (Blast detail)	Score	E value
AT4G23820.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	832	2e-089
AT5G41870.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	655	7e-069
AT3G62110.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	558	1e-057
AT4G33440.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	556	2e-057
AT3G16850.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	530	2e-054

EST library breakdown for ESTs in the assembly


11	2			50%


8	2			50%

Unigene Members