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Information for unigene UN13708

FASTA Sequence
Unigene ID: UN13708Length: 1534 SSR 
TATCGTTTTCGTTTATTTTGTTTTGTTGGGTGCAACTTCACCTCACAATTTTTTTGTATGAAGCACCTTTCTGATTCGTAGATATG
AGTCGTCTAGTCATCTTGATTTGATGAGGTTATAGTCTAACATCGACCTTTGATTGAAATAAGAACAAAAGAAAGAATACATACAT
CCCCTTCATCTTGCACCAATTCCTTTATTTTCTAGGGTTTTATTTTTATTACATTAGTTTTTTTATATTCTCTCTCTCTCTCTCTC
TCTCTCTCTCCCTTCTCTCTCTCTCTCGAATTTTATTCATCTGGGTATGGAAGAATATCAACATGAAAGCAGATCCACTCCTCATA
GACCTACCAACGCATCTGTTAAATCAGAAGCAAGCTCCTCAAGAATCAATCACTACTCTATGTTGATGAAAGCAATCCACAATACT
CAAGAAGATAACAACAACAACAACAACAATGATACGGAATCCATGAAAGCTAAGATAATCGCTCATCCCCACTACCCCACCCTCCT
ACACGCCTACTTAGACTGCCAGAAGATTGGAGCACCACCTGAGGTAGTTGATAAAATTACGGCGGCAAGGAAAGAGTTCGAGGCGA
GGCAGCAGCGGCCAATCGCGTCCGTGACTGCGCTGTCTAGAGACCCTGAATTGGATCAATTTATGGAAGCATACTGTGACATGCTG
GTCAAATATCAAGAGGAGCTAACACGGCCCATTGAAGAAGCAATGGAGTATATACGTCGTATTGAATCTCAAATTAGCATGTTGTG
TCAGGGTCCCATTCACATCCTCAACAATCCTGATGGGAAAAGTGAAGGAATGGAATCATCAGACGAAGAGCAAGAGAATAATAACA
GTGGAGGGGAAGCAGAATTACCGGAAATAGACCCGCGGGCGGAAGATCGGGAACTCAAGAATCACTTGCTGAAGAAGTATAGTGGA
TACTTGAGCAGTCTAAAGCAAGAACTCTCCAAGAAAAAAAAGAAAGGTAAACTTCCCAAAGAAGCAAGGCAGAAGCTTCTCACGTG
GTGGGAATTGCATTACAAGTGGCCATATCCTTCTGAATCAGAGAAGGTCGCGTTGGCGGAATCAACGGGGTTAGATCAGAAACAGA
TCAACAATTGGTTCATAAACCAAAGAAAACGTCACTGGAAACCATCCGAAGACATGCAGTTTATGGTGATGGATGGTCTACAGCAC
CCGCACCACGCAGCTCTATACATGGATGGTCATTACATGGGCGATGGTCCTTATCGTCTTGGACCATAAGAGACCGCTTGCAGATA
TCCAGAAGGGTTAGCCATATAATAACAACCTTTTGTCTGCTCTCTCGTTTACAGTTTATGGTTTCAGACTTTCCTTCACAAGTTTG
CTACCTATAGCTTTTTTACCCGTATTTAATGTCTTATATCGTTCAAGGGGTTTGAGACTTCCTAGTCATTTAATTTCACTTCTTTT
TTTTGTATTTTTTATAATGTTTTATTTATAATATATGTGTTTTAATAATGTGTGAAAAGAGATGATTATGAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
ACS28249 BREVIPEDICELLUS [Brassica rapa]16072e-176
ACR83812 brevipedicellus [Brassica napus]16072e-176
ACS28250 BREVIPEDICELLUS [Brassica oleracea]15921e-174
NP_192555 homeobox protein knotted-1-like 1 [Arabidopsis thaliana]14844e-162
AAM03026 homeodomain protein KNAT1/BP [Arabidopsis thaliana]14763e-161

Swiss-Prot top hits (Blast detail)Scoree value
P46639 Homeobox protein knotted-1-like 114842e-163
O04135 Homeobox protein knotted-1-like 210853e-117
Q41330 Homeotic protein knotted-110801e-116
O04134 Homeobox protein knotted-1-like 110772e-116
Q41853 Homeobox protein rough sheath 19285e-099

TrEMBL top hits (Blast detail)Scoree value
C5IX10 Brevipedicellus (Fragment)16071e-176
C5MKB4 BREVIPEDICELLUS (Fragment)16071e-176
C5MKB5 BREVIPEDICELLUS (Fragment)15928e-175
Q0Q5B4 BREVIPEDICELLUS14637e-160
Q49RB7 Knotted-like homeobox protein11511e-123

Arabidopsis top hits (Blast detail)Scoree value
AT4G08150.1 KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA); transcription factor14851e-164
AT1G62360.1 STM (SHOOT MERISTEMLESS); transcription factor7823e-083
AT1G23380.1 KNAT6; DNA binding / transcription activator/ transcription factor7053e-074
AT1G23380.2 KNAT6; DNA binding / transcription activator/ transcription factor6921e-072
AT1G70510.1 KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2); transcription factor6686e-070

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
201  17%
 
71  17%
 
61  17%
 
92  33%
 
121  17%

Unigene MembersMember information