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Information for unigene UN13716
| FASTA Sequence |
| Unigene ID: UN13716 | Length: 1485 |
SSR | | TTTTTTTTTCATTACATGCATTTGTTTGGTTTGGGTACAAAAAAAAAAACTTCCTTCCTCTTCTATGTGTAATAATAATTAATAAC
AGCTTGTTGTGTTGTTTTCAATTTTTAAGACATTGATTTTCTCCACCTAGAAGGGGTTCTTCCTTTGACAAGCCTTGTCTTCATAT
TCCCCGGAGTCTGAGGTTCAAACCCTTCACCATTCTCACAGTTCCTCATCTCTTCAATGCTAACACTTCCTCTAATAGAAGGGGCT
AACCCAAGCCTCTTCCACCTGAAAAACCCTTTACCCCCCCCACTCTTCTTCTCCAAAAGCCTCTCAACCTGCAGATGCATTGCACT
GCACTCGCTCTGCAGCCTCGCCACGTCTTCTCTAAGCCTCTTTATCTCTGCTTGCTGAACATTCATCTCGCGTTTGGACAAGCACC
TCGCTCCTCCTGCAGAGCCTTGCTCAAAGTAATGTGAGCCAGAAGCGTTGGTTGGACTCCTCGTCAAGCTACCACTCCAGTCAACG
TGACGGCTTAGCTTTGTCTGCTCGGTAAACAACACTCTGATGATTGCTCTCACCGGTAGACGATCGTTCTGTGCTGCGTGGAGAGC
TGCTTCTGGTGAGAGCTTTCTGCTATCAATGAGTCTGCACAGTTCCTTCCTTTCTTGCTTCAACACCTGAGGATGAGCCTTGAGGT
ATGTGTCAATGGCACGTACAAGCCATCCTCCGTGGTACGAGCATAGCTAGGGAGAGCTTCGATGAGCGAAATAAACTCCGGTAGAG
TCAAGCCACGTCAAGGGCGGCTTCAGCCAAGTAAGAGTCAACAAGTTTGGCCACTTTAACGAGAGCCGCACCGGTTTTAACACCTT
CACTATCCAATCCAACGAACTTCTTCACGAGACGAGTCACGAGCCCAACGTCGAGCAAAGTCTTAGACGTGTGGCTGAAGGAAGGT
ATCATGAGCTCCTTTAGCGAGGCTTGGTCCAGCTGCCACGCCACTCTGTTCTCGAGCTCCGTCAAGTAGTTCGGATTCGCTCCGAC
CATCTTCGCCGTCCTGAGGAGACGGAGGAGGAAGTTGCAGGGAACGGAGTCTTTCTCCGGCGGGAGGATTCCGATTAGGGTTTCGA
CGAAGAAACGTTTCTTCATTACAGAGGCCGTGACGCTTTCTGTCTGTGATGGTGGTGGTGGTGGTGGTGGTGTGGTGATGGCGGAG
ACGTTGCCGGAGAGATCGGGGAGCCATTTGGAAGCGTAGTGGGCGATGATGGAGCCGATGAGGTCTGGTCGGATGCCTTTGGATTT
GATGCCGGTTATGGTCTTGACGAAGTAGTTCATGTCTTGGATACAAGCTTCGTCGAAACAAGAGTAGTACTCCATGTCTTCTCCGG
CGAACTTTTCTTGGTCATGATGCGACGGTTGGTTGCCGGAGATGGTGACGGGTTCAGGCGAGTGTGCTTTCTTCATTTAGGTTCGT
GTTCTGTTCCACCGTGAGCTCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_188176 Phototropic-responsive NPH3 family protein [Arabidopsis thaliana] | 884 | 1e-092 |
| XP_002885094 phototropic-responsive NPH3 family protein [Arabidopsis lyrata subsp. lyrata] | 880 | 4e-092 |
| AAM61364 non-phototropic hypocotyl protein, putative [Arabidopsis thaliana] | 831 | 2e-086 |
| NP_175686 phototropic-responsive NPH3-like protein [Arabidopsis thaliana] | 709 | 3e-072 |
| XP_002891715 phototropic-responsive NPH3 family protein [Arabidopsis lyrata subsp. lyrata] | 700 | 3e-071 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q5KS50 Coleoptile phototropism protein 1 | 248 | 3e-020 |
| Q9S9Q9 BTB/POZ domain-containing protein At1g30440 | 239 | 4e-019 |
| Q9FMF5 Root phototropism protein 3 | 230 | 4e-018 |
| Q682S0 Root phototropism protein 2 | 218 | 1e-016 |
| Q9FKB6 BTB/POZ domain-containing protein At5g48800 | 176 | 7e-012 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LRP8 Non-phototropic hypocotyl-like protein | 884 | 9e-093 |
| Q8LFK3 Non-phototropic hypocotyl protein, putative | 831 | 1e-086 |
| Q9C941 At1g52770 | 709 | 2e-072 |
| B9RUY5 Signal transducer, putative | 660 | 9e-067 |
| B9GWP2 Predicted protein (Fragment) | 655 | 3e-066 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G15570.1 phototropic-responsive NPH3 family protein | 884 | 5e-095 |
| AT1G52770.1 phototropic-responsive NPH3 family protein | 709 | 1e-074 |
| AT1G30440.1 phototropic-responsive NPH3 family protein | 239 | 3e-020 |
| AT5G64330.1 NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3); protein binding / signal transducer | 230 | 3e-019 |
| AT5G64330.2 NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3); protein binding / signal transducer | 230 | 3e-019 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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