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Information for unigene UN13723
| FASTA Sequence |
| Unigene ID: UN13723 | Length: 988 |
| SNP | GGATCATCTTCTTCATTAAGCAAAACAAAAAACTTCAACCACTTCCTCTTCTTCAGTTTTCATCGAAAACAATGGCTGGAGTTGCC
TTTGGTTCTTTTGATGATTCTTTCAGCTTGGCTTCTCTAAGAGCTTACCTGGCTGAGTTCATCTCCACTTTGCTCTTTGTTTTCGC
TGGTGTTGGTTCCGCCATTGCCTACGCGAAGCTGACGTCAGATGCGGCTCTTGATACCCCGGGGCTTGTCGCCATCGCCGTATGCC
ATGGTTTCGCCCTCTTCGTGGCGGTTGCAATCGGAGCCAACATCTCCGGTGGCCATGTGAACCCAGCCGTCACTTTTGGCCTTGCT
GTCGGTGGTCAAATCACACTAATCACCGGAGTTTTCTACTGGGTGGCTCAGCTTCTCGGCTCCACCGCCGCTTGCTTCCTTCTCAA
ATACGTCACCGGTGGTTTGGCGGTTCCAACCCACAGCGTTGCTGCGGGAGTAGGAGCGATAGAAGGAGTAGTGATGGAGATCATCA
TCACTTTCTCTTTAGTCTACACCGTCTACGCCACCGCCGCTGATCCCAAAAAGGGTTCTCTCGGAACCATCGCTCCCCTCGCCATT
GGTCTCATCGTCGGTGCCAACATCCTAGCCGCCGGTCCATTCTCTGGTGGATCCATGAACCCAGCACGTTCCTTTGGACCAGCTGT
TGCAGCAGGAGACTTCTCTGGTCACTGGGTCTACTGGGTTGGACCACTCATCGGTGGTGGACTCGCTGGAGTTACCTACGGAAATG
TCTTCATGACTTCCGAACATGTTCCTCTGGCTTCTGAGTTCTAAGCAAGAAAATGTGAGGATTCTGTGTTTGGTTTCTTTGTCTCT
CGATCGATATGTTGCATTGTTCGGAGTTTGGTCAGGTTTCATTGTATCTTGTATCCAATTTGTATGAGTATCATTTAATGGAATCA
GTTCGTTGTATCTAATGGAATCATTACGATATTTTTATGGCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAA31452 delta-VM23 [Raphanus sativus] | 1250 | 3e-135 |
| NP_188245 aquaporin TIP2-1 [Arabidopsis thaliana] | 1206 | 3e-130 |
| AAL38357 delta tonoplast intrinsic protein [Arabidopsis thaliana] | 1198 | 3e-129 |
| ACD12709 water channel protein [Chorispora bungeana] | 1176 | 1e-126 |
| XP_002515999 tonoplast intrinsic protein, putative [Ricinus communis] | 1107 | 1e-118 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q41951 Aquaporin TIP2-1 | 1206 | 2e-131 |
| P21653 Probable aquaporin TIP-type RB7-5A | 994 | 6e-107 |
| P24422 Probable aquaporin TIP-type RB7-18C | 990 | 2e-106 |
| P33560 Probable aquaporin TIP-type | 989 | 2e-106 |
| Q5Z6F0 Probable aquaporin TIP2-2 | 968 | 6e-104 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O82142 Delta-VM23 | 1250 | 2e-135 |
| B2ZC62 Water channel protein | 1176 | 7e-127 |
| B9RQI0 Tonoplast intrinsic protein, putative | 1107 | 7e-119 |
| Q39935 Aquaporin | 1104 | 2e-118 |
| Q39800 Delta-tonoplast intrinsic protein | 1098 | 8e-118 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G16240.1 DELTA-TIP; ammonia transporter/ methylammonium transmembrane transporter/ water channel | 1206 | 1e-132 |
| AT4G17340.1 TIP2;2 (TONOPLAST INTRINSIC PROTEIN 2;2); water channel | 961 | 3e-104 |
| AT5G47450.1 AtTIP2;3; ammonia transporter/ methylammonium transmembrane transporter/ water channel | 947 | 1e-102 |
| AT2G36830.1 GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN); water channel | 784 | 1e-083 |
| AT3G26520.1 TIP2 (TONOPLAST INTRINSIC PROTEIN 2); water channel | 784 | 1e-083 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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