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Information for unigene UN13787
| FASTA Sequence |
| Unigene ID: UN13787 | Length: 1284 |
| SNP | GGACTTCACGAAGGTTGACCTGCTTCGTTGGCGTTTCAATCCACCGGATTCGATCTCCATCTCTCGATCGAAGATTAATAAAGTTT
TCACCTTTCGATGGATTTGGATAGCATGGACTGTGCTTCAACCGTTGATATCACAGACGACGAAGAGATCCACCAAGATCGCCATT
CCTACGCATCGGTTTCGAAGCATCACAGTAATAACAGCAACGCTAATGCTGCTGCTTCTGGTCTTCTTCCGACAACCACCAGTGTT
CACGAGCTTCTCGAATGTCCTGTCTGCACCAATTCTATGTACCCTCCTATTCATCAGTGTCACAATGGACATACTCTATGTTCAAC
TTGTAAGAACAGGGTTCACAATCGCTGCCCTACTTGTAGACAAGAGCTCGGTGATATCCGTTGCTTGGCACTCGAAAAAGTAGCGG
AATCTCTTGAGCTACCTTGCAAGTATATGTCGCTTGGCTGTCCTGAGATATTCCCTTATTACAGTAAGCTGAAACACGAGACTGTG
TGTAACTTCAGGCCTTATAACTGTCCGTATGCTGGTTCCGAGTGTTCTGTTATGGGTGATATCCCTTTCTTAGTTGCTCATCTGAG
GGATGATCACAAGGTGGATATGCATTCTGGGTGTACTTTCAACCATCGTTATGTCAAGTCTAATCCTCGTGAAGTCGAAAACGCCA
CGTGGATGTTAACTGTCTTTCACTGCTTTGGTCAATACTTCTGTCTCCACTTTGAGGCATTCCAGCTCGGTATGGCTCCAGTGTAC
ATGGCGTTCCTGCGTTTCATGGGGGACGAGACAGAAGCTCGGAACTACAACTACAGTTTAGAAGTTGGAGGTTATGGTCGGAAGCT
GATTTGGGAAGGAACACCGAGAAGCGTAAGAGACAGTCACAGGAAAGTTAGAGACAGTCATGATGGGCTAATCATACAGAGGAACA
TGGCTCTTTTCTTCTCAGGTGGAGACAGGAAAGAGCTGAAACTGCGAGTTACTGGAAGAATCTGGAAAGAGCAGCAGCAGCAAAGT
GGTGAAGGTGGAGGAGGAGCTTGTATCCCAAACTTGTCTTAATAATAATTGATTTTTGAAACTCTTCACTTGGCTCTGTCTATGTG
TAACCATGGTTCTTGGAAGTGTCTGTAATTAAAGGCTGTGTCTGTGATCTATGATGTAAACTTGGGTTGTGGCTTCTTTCTTTTTT
CTCTAGCTTGTTCTCATGTCATGGAGAGTTTAAATGGTTCAATACAAGTCAGTCTGGTATACCTGGAATATGTAAATGTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002878413 hypothetical protein ARALYDRAFT_486680 [Arabidopsis lyrata subsp. lyrata] | 1698 | 5e-187 |
| NP_567118 E3 ubiquitin-protein ligase SINAT3 [Arabidopsis thaliana] | 1693 | 2e-186 |
| AAM61286 seven in absentia-like protein [Arabidopsis thaliana] | 1688 | 7e-186 |
| CAB71109 seven in absentia-like protein [Arabidopsis thaliana] | 1639 | 3e-180 |
| XP_002523339 Ubiquitin ligase SINAT3, putative [Ricinus communis] | 1504 | 1e-164 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q84JL3 E3 ubiquitin-protein ligase SINAT3 | 1701 | 9e-189 |
| Q9STN8 E3 ubiquitin-protein ligase SINAT4 | 1351 | 3e-148 |
| Q8S3N1 E3 ubiquitin-protein ligase SINAT5 | 1346 | 1e-147 |
| Q9M2P4 E3 ubiquitin-protein ligase SINAT2 | 1200 | 1e-130 |
| P93748 Putative E3 ubiquitin-protein ligase SINAT1 | 1181 | 2e-128 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SBH0 Ubiquitin ligase SINAT3, putative | 1504 | 1e-164 |
| B9SBH2 Ubiquitin ligase SINAT3, putative | 1504 | 1e-164 |
| A5BYR4 Putative uncharacterized protein | 1466 | 2e-160 |
| C6T9K2 Putative uncharacterized protein | 1463 | 6e-160 |
| A9PEZ7 Predicted protein | 1461 | 9e-160 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G61790.1 seven in absentia (SINA) family protein | 1702 | 6e-190 |
| AT4G27880.1 seven in absentia (SINA) family protein | 1355 | 1e-149 |
| AT3G58040.1 SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2); protein binding / ubiquitin-protein ligase/ zinc ion binding | 1200 | 1e-131 |
| AT2G41980.1 seven in absentia (SINA) family protein | 1181 | 2e-129 |
| AT5G53360.1 seven in absentia (SINA) family protein | 1022 | 4e-111 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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