 |
Information for unigene UN13796
| FASTA Sequence |
| Unigene ID: UN13796 | Length: 978 |
SSR | SNP | GGGAGCCACCACCAAACAATGGCTGTTTCGCTCTCGTCTTCCTCGTCGTCGTCGTCGATCACTTCCATTACGCTGCAGCCGAAACC
GAAAACTATTTACGGCTTAGGGACAGTAAACTTCGGTGGTTATTCGGTGAATTCTCACGGCGTCTCTCTCCGGCGAAGCGCCGTGG
TCGTGTCGGCCATCACCGGCGCTTCAGGAACTGAAACTGCTGATTTGCTAGAGACGGTGAAAGTCTCGGACTTGAGAGGAAACGAG
ATTCCGATCTCTGATTTATGGAAGGATAGGAAAGCTGTCGTTGCGTTCGCTCGTCATTTCGGATGCGTGCTGTGTCGGAAACGAGC
AGCTTATCTTGCGGAAAAGAAGGATGTGATGGATGCGTCTGGTGTTACTCTTGTTCTCATTGGACCTGGAAGTATCGATCAGGCCA
AAACTTTTGTGGAACAGACGAAATTTGAAGGAGAGGTGTATGCGGATCCAAACCACGCATCATACGAGGCGCTTAAGTTTGCTTCA
GGGGTTTCTGTGACATTTACTCCCAAAGCTGCTATGAAGATAATAGAGTCTTACATGGAAGGATACCGCCAAGACTGGAAACTCTC
GTTTATGAAAGATACTGTTGAAAGAGGCGGCTGGCAACAAGGTGGAATCCTAGTTGCTGGGCCTGGGAAAAACAACATCTCTTACA
TCCGCAAGGACAAAGAAGCTGGAGATGATCCGCCTGTTGAAGAGATCCTAAAAGCGTGTTGCGCTTGAAAAGACATCATTGTTTCT
TTATCGTAGAGTCAAGACTCTATCTCCTCTCCTCCTGTAGTTTATAGGGGACATAAAACTTTGATGTACTTCGTTCAGTAAAACGT
GTTCATTTGGTATGTATTTGTAAAGACGTAAAACCCGATACATATTGGGTGTAGTGTATATATTCTCTCCTTGTCGTTGCAGTAAA
GCTTGGTCAAAATTTGATACAAGTTTGTGATC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_030274 Thioredoxin-like protein [Arabidopsis thaliana] | 1072 | 1e-114 |
| XP_002881499 hypothetical protein ARALYDRAFT_482716 [Arabidopsis lyrata subsp. lyrata] | 1052 | 2e-112 |
| XP_002525198 conserved hypothetical protein [Ricinus communis] | 830 | 1e-086 |
| XP_002326159 predicted protein [Populus trichocarpa] | 799 | 5e-083 |
| ACU20039 unknown [Glycine max] | 786 | 2e-081 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9ZUU2 UPF0308 protein At2g37240, chloroplastic | 1072 | 5e-116 |
| Q5R7S9 Uncharacterized protein C1orf93 homolog | 173 | 9e-012 |
| Q8TBF2 Uncharacterized protein C1orf93 | 172 | 1e-011 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SGS9 Putative uncharacterized protein | 830 | 9e-087 |
| B9MT70 Predicted protein | 799 | 4e-083 |
| C6TDY7 Putative uncharacterized protein | 786 | 1e-081 |
| A9NTM4 Putative uncharacterized protein | 688 | 3e-070 |
| B8ALJ3 Putative uncharacterized protein | 673 | 1e-068 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G37240.1 INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65840.1); Has 252 Blast hits to 252 proteins in 46 species: Archae - 0; Bacteria - 20; Metazoa - 145; Fungi - 10; Plants - 66; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | 1073 | 4e-117 |
| AT5G65840.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37240.1); Has 167 Blast hits to 165 proteins in 51 species: Archae - 0; Bacteria - 28; Metazoa - 51; Fungi - 13; Plants - 59; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | 244 | 5e-021 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
