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Information for unigene UN13821
| FASTA Sequence |
| Unigene ID: UN13821 | Length: 1631 |
SSR | | GGGGTGGTTGGGTTGTTTCGTTTCCATCCACTCTTTCTCTCTTGTTTGTTTCTTCCTCCAGCCCTTCGCCAGACCATCAAGGAGGG
AGGACAACAAAAGCTTAGCTTTTTTTTTGGGGGTTTAATCAATCAAAGAAGAACAGATTTGAATTTTTATTGGGTCTTCAGAGAAG
AAGAAGCAGAGACATTTAAAAAGGAGGGAAGACAATGGAGGAAACAATGGCGGCGAGGTATTGGTGTCACATGTGTTCACAGATGG
TGAACCCCACAATGGAATCCGAGATCAAATGCCCCTTTTGCCAAAGCGGATTCGTCGAAGAAATGAGCGGTAACGGAGGATTAAGA
GACGTGCAAGACCCAGAAACGGAGTTTGGAACAACAGACCGTGCCATGTCTCTATGGGCACCAATCTTGCTCGGGATGATGAGCAG
TCCTCGTAGACGAAGAAGGTTCAGAAGAGCAGAGCTCGGTTCAGAAGAAGAAGACAATGAAGACGATGATGATGTTGTTGATCGTC
ATCATCATCATCATAGAGCTAGAAGACACGGTGGAGAGATTGATTTGGACAGAGAGTTCGAATCTATCTTGAGGAGAAGACGGAGA
AGCTCGGGGAATATACTGCAGCTGCTTCAAGGGATACGCGCAGGGATTGCTTCTGAGTACGAGAGCTCTGATAACAACGAGAGAGT
TATAATGATCAATCCTTATAACCAGTCCCTCGTTGTGAGAGGATCTTCTGATCAGACTCAGACCCATTCTGCGTTGACTTCGCTTG
GAGACTACTTCATTGGACCTGGTTTGGATCTCTTGCTTCAGCATTTGGCTGAGAACGATTCCAACAGGCAAGGGACTCCGCCTGCT
CGTAAAGAAGCGGTCGAGGCTTTGCCGACGGTTAAGATAACAGAGCCTTCGTTGCAGTGTTCGGTTTGTTTGGATGATTTTGAGAG
AGGCGTTGATGAAGCGAAAGAGATGCCGTGTAAGCATAAGTTTCATGTCAAGTGTATTGTCCCGTGGCTTGAGCTTCATAACTCGT
TTCCCGTGTGTCGGTTCGAGCTTCCTTCTGGTAATGATGATGGTGATGGTGAGAGTAAGGTTGAGTCAGGGGGAGGAGCGAGGACG
AGAAGTGTTCCTGAGAGTAGTGACAGAGAGGTTGTTGAGAATGTGGGGGAGAGAGGAAGAGAGGATGATGTGAGGAGTGGGAATGG
GAGAAGGTTCTCGATTCCATGGCCGTTCAGTGGTTTCTTCTCTTCTTCTTCTTCTTCCTCGTCTTCTTCTTCTTCGGCATCTGGAT
CATCTGGGTCTGGTGAGAACAATGTCTACTCAAGATCTTACGGTTCTTCTCGCTGATAAGACATCCAACAAATAAAAAAGATCTTG
GTTCTGTTGTTGTTGTCTTGTATTTTCTCATGTTCTAGCTCTTTGATTTGTTTCCTTCTCTGCATTTCATTTTGCTGCTTTGTATG
TACATAACAATGATGTTCTTTTACTCATGACTGTTTAAAAAAATTCCATGGAGGTATGTTTTTCTTCGTTTCATTGTTGCTGTTGT
ACATAATCAAATTGGGTTTGTGTGTTTTTGGTTAATACTGTTTTTGTTATTGTAATTGTGTCTTGTATATCAAACTTATGTCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002864451 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 1512 | 2e-165 |
| NP_200445 RING/U-box domain-containing protein [Arabidopsis thaliana] | 1277 | 4e-138 |
| XP_002867566 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 1091 | 2e-116 |
| NP_194370 RING/U-box domain-containing protein [Arabidopsis thaliana] | 988 | 1e-104 |
| CAA18230 putative protein [Arabidopsis thaliana] | 915 | 4e-096 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q0II22 RING finger protein 126 | 220 | 6e-017 |
| Q9BV68 RING finger protein 126 | 220 | 6e-017 |
| Q91YL2 RING finger protein 126 | 218 | 1e-016 |
| Q9Y4L5 E3 ubiquitin-protein ligase RNF115 | 214 | 3e-016 |
| Q9SPL2 E3 ubiquitin-protein ligase CIP8 | 213 | 4e-016 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FM98 Genomic DNA, chromosome 5, P1 clone: MCD7 | 1277 | 3e-138 |
| Q8L5Z3 AT4G26400 protein | 1090 | 1e-116 |
| O65594 Putative uncharacterized protein AT4g26400 | 1003 | 2e-106 |
| Q9ZVU8 At1g55530/T5A14_7 | 843 | 6e-088 |
| B6SKJ6 RING finger protein 126 | 687 | 7e-070 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G56340.1 zinc finger (C3HC4-type RING finger) family protein | 1278 | 1e-140 |
| AT4G26400.2 zinc finger (C3HC4-type RING finger) family protein | 1090 | 7e-119 |
| AT4G26400.1 zinc finger (C3HC4-type RING finger) family protein | 1090 | 7e-119 |
| AT1G55530.1 zinc finger (C3HC4-type RING finger) family protein | 843 | 3e-090 |
| AT3G13430.1 zinc finger (C3HC4-type RING finger) family protein | 558 | 4e-057 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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