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Information for unigene UN13825

FASTA Sequence
Unigene ID: UN13825Length: 1358 SSR 
CGGCACGAGGGCGAACAGAGACTACTCAACAAAACCCCGTAGTCCTTACCCAGCGCATCAGAGATTTCTTCTAACGCGAAAAGGTC
TCGCCTTTTGAGGGGGGCAAAGATGAATTCGATTTTCTCACGTAGAGTCGTCGTCGACTCATCCTCGCGTCTCACCAAACTGCTCG
CGAACCAACCGAATCATCACTCCTCCTTCACTTCCATCTATCGACCGAGCCAGACCCGCCATTTTCGGACCCACTACCTTCCTTCG
ACCCCGTCTCCTCCTCCTCCTCCCGCGAGCCGCTGCTTCGACCCTTCTCTCCTATGGCGATCGGAGAAGATTCGTGGGTTTTTCGC
GAGCGCTCTAACGAACAAATCCGTGAAACTGGGGAATCTCGTGGAATCAAAAGTTGGGTTCTTCCGTTCTCAGTTTCCCAGAAAGA
GTTTCGAGTTCGGAGGCTATTCTGGGTTTCAGAGACGTGGATGGAAGAATTGGCTTCAAGGACTATCATCTAATGACGTTGTTCTT
GGATTACTACTAGCTAACGCTGGTGTCTTTATCATGTGGCGTGTTTTCGACCAACGTTTCATGATGAATAACTTCATGATATCGTT
GGACAATTTTCACCAGTGGACGTCTACACACACTGATAACTTCGGCATTCAGTCATATTGATATTGGACATATCGTCTCAAATATG
ATTGGTCTCTACTTCTTTGGAACCAGTATCGCAAGAAACTTTGGCCCTCAGTTCCTTCTGAAGCTTTACTTTGCTGGAGCGCTTGG
TGGCTCTGTGTTCTACTTGATTCACCATGCTTATCTTGCTGCCTCATCTCCCAAGGGCCATGGAGCTTTCGTGAGGGATCCATCCA
GAACCCCGGGACTGGGTGCGAGTGGAGCTGTGAATGCCATCATGCTGCTCGATATTTTCCTGCACCCAAGAGCTACTCTTTACCTT
GAATTTTTCATTCCAGTTCCCGCAATGCTGCTTGGAATTTTCCTCATTGGTAAAGACATTTTAAGGATAACAGAGAGGGACAGTAA
CATTTCAGGTTTTGCTCATTTGGGAGGGGCTGCAGTTGCAGCCATTGCTTGGGCTGGGATTAGGAGAGGTCGCTTCCGTTTTTGAA
CCTTTTGACCTAAACATTGCTTGGCTTTGGTCATTTTAGAGAGAGAGAGAAAAAAAACTATTTTAAAATGATTTAGGAACTTTGAG
ACCATATTGTGGCTCACAAGATTATTAGATTTTACCATTTATGTTTTTCCAAATATTAATTTTGTCTGTGTTTGTTGCTGCCGAAC
CTACCTATAGACTGATCCGATCCACTTTGGAACATCAACTTTCAATTATATTAGTTTGTTAAGTTTTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_564058 RHOMBOID-like protein 12 [Arabidopsis thaliana]8088e-084
XP_002890288 rhomboid family protein [Arabidopsis lyrata subsp. lyrata]7953e-082
XP_002309495 predicted protein [Populus trichocarpa]6823e-069
XP_002514635 conserved hypothetical protein [Ricinus communis]6332e-063
XP_002265768 PREDICTED: hypothetical protein [Vitis vinifera]6303e-063

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9FZ81 F25I16.6 protein8085e-084
B9HDD8 Predicted protein (Fragment)6822e-069
B9RLL6 Putative uncharacterized protein6331e-063
D5ABD9 Putative uncharacterized protein4771e-045
A5BSH8 Putative uncharacterized protein4708e-045

Arabidopsis top hits (Blast detail)Scoree value
AT1G18600.1 RBL12 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12)8092e-086
AT1G74130.1 rhomboid family protein4015e-039
AT1G74140.3 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: rhomboid family protein (TAIR:AT1G74130.1); Has 428 Blast hits to 428 proteins in 155 species: Archae - 4; Bacteria - 272; Metazoa - 0; Fungi - 4; Plants - 36; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).3764e-036
AT1G74140.5 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: rhomboid family protein (TAIR:AT1G74130.1); Has 536 Blast hits to 536 proteins in 206 species: Archae - 2; Bacteria - 298; Metazoa - 30; Fungi - 50; Plants - 36; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).3764e-036
AT1G74140.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: rhomboid family protein (TAIR:AT1G74130.1); Has 484 Blast hits to 484 proteins in 189 species: Archae - 2; Bacteria - 267; Metazoa - 30; Fungi - 47; Plants - 36; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).3692e-035

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
211  11%
 
191  11%
 
121  11%
 
96  67%

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