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Information for unigene UN13840

FASTA Sequence
Unigene ID: UN13840Length: 1351  SNP
GCTGGTCCAAGGAGAAGTAAGAGACAGTCGGAGAAACAAGGATCATCCTTGACGTGGAAAGATTCTTCCCTAAGCAAAAAGGAGGA
GAATGGTGGATGGGATGACCCTAGAACATTTATAACAGCCCTTGAGAAAGTGGAAGCTTGGATCTTTTCACGCGTTGTTGAATCCA
TATGGTGGCAGACTTTGACACCGCGTATGCAGTCTTCGGCAGCGAATGGTTCAGGCTCAAAGAAAAACTATGGTACAAGTCGGAGT
TCGGTGAACCAGGAACAAGGTGACTTCTCACTAGAGCTTTGGAAAAAGGCTTTCAGAGATGCACACGAGCGTTTATGCCCTCTGCG
AGCTAGTGGCCATGAATGTGGTTGTTTGCCCGTCCCTGCCCGTCTGATAATGGAACAGTGCGTGGCTCGGCTGGATGTCGCAATGT
TCAATGCTATACTTCGTGATTCTGATGAAAACTTCCCTACAGACCCTGTCTCTGATCCCATTGCTGACTCCAGGGTCTTGCCTATT
CCTTGTTCAATAACAAGTTTCGGTTCTGGTGCCCTCCTCAAAAACTCGCTAGGAAACTGGTCCAGGTGGCTCACTGATTTATTCGG
CATCGATGATGATGACCAAGAGAATAGCTACGTTGGTACTGCACCTTTCAAGACTTTTATTCTTCTCAAGGCCTTGAGCGATCTAA
TGATGCTTCCAAAAGATATGCTCCTCGACACTTGTGTTAGAAAAGAGGTTTGCCCAACGTTTGGTGCACCGTTGATCAAGAGAGTC
TTGAATCATTTTGTCCCCGATGAGTTCTGCCCTGACCCAGTTCCTGTTGCTCTACTCGAAGCTCTTGAATCACAGGAGGGAGAAGA
GAAGGCTATGATCACAAGCTATCCATGTACGGCACCTCCTCCTGTCTACTCTCCACCTTCAGGGACTTCAATCTCCACTATCATTG
GAGACTTTGGACAGCCTCAAGCGCCTCACCTATGCCGAATCAGGTCTTCGGTTACAAGAAAAGCCTACACAAGCGACGACGAGCTT
GATGAGCTCAGTTCACCGTTGGCTGTTGTCCTTCTTCAACATTCGGATTCTAACAAGGTCAATAATGTGGGTGCAGATGAGACAGT
CAGGTATCAACTTCTCAGGGAGTGTTGGACCAACGGGGACTGACCAGACATTGATGTGTGTTTTCTGTTTCAATTGTGACTTCTGA
AGGTATTATTATGTGTCTTTGCCAGTTCGTTGTTTGGTGTTGCTATGTATAGAGAATGTAGCCCGAACTCTAATTAACAGAAGTAA
CAGTATCAAAGACATGTTTACACTCTTGAAATAGAATGTTGCCCGAGCGGAGTGTGTGTTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002884258 hypothetical protein ARALYDRAFT_317012 [Arabidopsis lyrata subsp. lyrata]13723e-149
NP_186830 uncharacterized protein [Arabidopsis thaliana]13356e-145
BAE98842 hypothetical protein [Arabidopsis thaliana]13267e-144
XP_002509546 conserved hypothetical protein [Ricinus communis]11456e-123
XP_002514952 conserved hypothetical protein [Ricinus communis]11152e-119

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9SGJ0 F28J7.14 protein13354e-145
Q0WVK6 Putative uncharacterized protein At3g0181013265e-144
B9RBL2 Putative uncharacterized protein11454e-123
B9RMI3 Putative uncharacterized protein11151e-119
B9HT98 Putative uncharacterized protein (Fragment)10891e-116

Arabidopsis top hits (Blast detail)Scoree value
AT3G01810.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 1293 Blast hits to 384 proteins in 97 species: Archae - 2; Bacteria - 96; Metazoa - 212; Fungi - 99; Plants - 59; Viruses - 0; Other Eukaryotes - 825 (source: NCBI BLink).13362e-147
AT2G42320.1 nucleolar protein gar2-related9428e-102
AT2G42320.2 nucleolar protein gar2-related9428e-102
AT3G01810.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 1224 Blast hits to 385 proteins in 102 species: Archae - 2; Bacteria - 107; Metazoa - 205; Fungi - 107; Plants - 62; Viruses - 0; Other Eukaryotes - 741 (source: NCBI BLink).9104e-098
AT5G43230.1 unknown protein8934e-096

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
61  11%
 
95  56%
 
113  33%

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