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Information for unigene UN13887
| FASTA Sequence |
| Unigene ID: UN13887 | Length: 1750 |
SSR | | TCTTCTTCCTCTGTCCTTTTTCTTCTCTATCAGGCTTCAGTAAGCAATGTCAGTGGTTTTAGTCTCTTCAGCTTCAGCTTCAGCTT
CAGCTTCAGCTTCAGCGACACACACAAAATCTAATTCCATAAAGATTCCCTTTTTATCTCCCCCGTCCAGAGTCTCGATTTCTCCT
CGAAGATGGAAACTTCTCGACAGCCCTCTTCGCGTGGCGGCCCCACCTTCGTCAGTACCCACTTCAGATCCGGCTGAGGAGAGTCG
GTTTGAAGATGAGTACGGCGGAGAGAAGGAGGAAGAAGGGTCTGAGTTCAAGTGGAGAGATCACTGGTATCCGGTTTCTCTTGTCG
AAGATTTGGATCCGAATTCGCCAACCCGGTTTCAGCTCCTGGGTCGAGACCTCGTCCTCTGGTTCGATCGGAACCATCAGAAATGG
GCCGCCTTTGATGACCTCTGCCCTCACCGCCTTGCTCCTCTATCTGAAGGAAGGTTGGATGAGAACGGACACTTGCAATGTTCATA
TCATGGATGGTCTTTTGCCGGGTGTGGATCTTGCACTAGGATTCCGCAGGCTGCTACTTCAGGTCCCGAAGCTCGCGCTGTTAAAT
CTCCCAGAGCTTGCGCTATTAAGTTCCCAACAAAGGTGTCTCAGGGTCTTCTCTTTGTTTGGCCTGATGAAAATGGATTTGATAGA
GCAAACTCCATTGAGCCCCCTAGGTTGCCGGATGACTTCGATAAACCGGAGTTTTCAACGGTGACAATTCAAAGGGATCTTTTCTA
CGGATATGATACTCTCATGGAAAACGTATCTGATCCTTCCCATATCGATTTTGCTCATCACAAGGTAACAGGAAGAAGAGACAGAG
CCAAACCATTGCCCTTCAAGGTAGAATCAAGTGGTCCTTGGGGTTTCCAAGGTGCCAACGACGACAGTCCAAAGATAACCGCAAAA
TTCGTTGCTCCGTGCTATTCTCTTAACAAAATTGAGATAGATGCGAAGCTACCGATTGCCGGTAACCAAAAATGGGTTATATGGAT
TTGCTCATTCAATATACCAATGGCTCCAGGGAAGACCCGTTCTATCGTTTGCAGCGCCCGTAACTTCTTCCAGTTCTCTGTACCAG
GACCTGCTTGGTGGCAGGTTGTACCAAGATGGTACGAGCACTGGACTTCCAACTTAGTATATGACGGAGACATGATTGTACTTCAG
GGACAAGAGAAAGTATTCCTCTCTAAATCAATGGAGTCACCAGACTACGATGTGAACAAACAGTACACGAAGCTCACGTTCACTCC
AACACAGGCAGACCGTTTCGTTTTAGCTTTCAGAAACTGGCTCAGACGGCACGGCAAGAGTCAGCCTGAGTGGTTCGGCTCCACTA
CAGCTTACCAACCTCTCCCTTCCACTGTCTTAACCAAGCGCGAGATGCTGGATAGGTTTGAGCAGCATACACAAGTGTGTTCCTCT
TGCAAAGGAGCATACAACGGTTTCCAAACCCTGAAGAAGTTTCTTGTCGGAACCACGGTTTTCTTGGCTGCCACGGCTGGTGTTCC
TTCAGATGTCCAGATTCGGTTGGTTCTCGCCGGTTTAGCTCTGATTTCAGCTGCTTCTGCTTATGCTTTACATGAAAAAGAGAAGA
ACTTTGTGTTCAGAGATTACGTGCATTCTGAAATCGAATAGATACGTATAATCATTATACAACTTTTGTAAAATCAAAACCATAGC
AACTTCTAGTAAATTTATAGTATCACCACC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABD60317 chloroplast pheophorbide a oxygenase PaO1 [Brassica napus] | 2705 | 1e-303 |
| ABD60316 chloroplast pheophorbide a oxygenase PaO2 [Brassica napus] | 2672 | 8e-300 |
| BAJ33768 unnamed protein product [Thellungiella halophila] | 2661 | 1e-298 |
| XP_002875700 hypothetical protein ARALYDRAFT_905628 [Arabidopsis lyrata subsp. lyrata] | 2633 | 3e-295 |
| NP_190074 pheophorbide a oxygenase [Arabidopsis thaliana] | 2618 | 1e-293 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9FYC2 Pheophorbide a oxygenase, chloroplastic | 2618 | 6e-295 |
| Q9XJ38 Chlorophyllide a oxygenase, chloroplastic | 186 | 6e-013 |
| Q9ZWM5 Chlorophyllide a oxygenase, chloroplastic | 154 | 3e-009 |
| Q44256 3-chlorobenzoate-3,4-dioxygenase oxygenase subunit | 153 | 4e-009 |
| Q52185 Phenoxybenzoate dioxygenase subunit alpha | 144 | 5e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0ZKW3 Chloroplast pheophorbide a oxygenase PaO1 | 2705 | 8e-304 |
| Q0ZKW4 Chloroplast pheophorbide a oxygenase PaO2 | 2672 | 5e-300 |
| B9N879 Predicted protein | 2072 | 2e-230 |
| Q8W5A3 Lethal leaf spot 1-like protein | 2072 | 2e-230 |
| B9SCL6 Pheophorbide A oxygenase, putative | 2067 | 8e-230 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G44880.1 ACD1 (ACCELERATED CELL DEATH 1); iron-sulfur cluster binding / pheophorbide a oxygenase | 2619 | 4e-296 |
| AT4G25650.1 ACD1-LIKE (ACD1-LIKE); 2 iron, 2 sulfur cluster binding / electron carrier/ oxidoreductase | 663 | 3e-069 |
| AT4G25650.2 ACD1-LIKE (ACD1-LIKE); 2 iron, 2 sulfur cluster binding / electron carrier/ oxidoreductase | 446 | 4e-044 |
| AT2G24820.1 TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55); 2 iron, 2 sulfur cluster binding / electron carrier/ oxidoreductase | 423 | 2e-041 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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