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Information for unigene UN13900

FASTA Sequence
Unigene ID: UN13900Length: 785  SNP
CGAAAACAACTTGTAAATGAATACGTTATGTTAATAATAATCTACACACTTTGTAAATTAGCAAGTAGTAACTTCATCATAAGATT
ACACAGGACATCTCTTGACCCAAATTTTTTCAACAACAGTACACACATTTATTCAGCATAAGTCCTAATATATTCACACAAACCAG
CTTACAAAAGCAATGTCAAACCGACGACAACAAACCCCATGAGCACGAGCACGACCCTTCCGAGACCAGTGGCGAGGACACTAGAA
CCGGAGGCGCTGTTGCAGTAATTGAAACCATACCATATATTCTCAGGGACTAGCGTGTTATACGGGAAGGTGACGACTTTGGAGCC
ATGGGTAGATATCTTAACGCTATCAGGGATCCAGCCATCGGGACCAGACCTGTAGAGATAGACGTAGCATATCTGGTAAGTGCATG
GTCCGTTTATCTGGAACGTGTCGGATGAACATTGCTCGAACGTCTTTGTAGCTGGATCGTCAAGCCTTGGTGCGTATATCTGGTTT
CCGTATGCATCTCCGAAAGCGAGGCTGATTTGATCGCGCGTGTACCTCGACGACGAACAGCTCGTCGAGATGATCACTGTGTACGA
ACAACTAGTCCTCAATTTCTGGATGAGGCTGACATTGAAAGACTCAGCGGCGTGAGGAGTCTCCAAGAGTTTGGATTCGGTAACTG
AGACGGAGATTGACAAGACGAAGATGAGATGAGTGAAGAGACGTGTTGACACCATTTTCTTTTCTTTTGCTTCTCGAAATCGCTCG
GAGAGAGAGCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_201026 Embryo-specific protein 3, (ATS3) [Arabidopsis thaliana]7976e-083
BAA97184 unnamed protein product [Arabidopsis thaliana]7976e-083
XP_002866478 hypothetical protein ARALYDRAFT_496397 [Arabidopsis lyrata subsp. lyrata]7922e-082
BAD43699 unknown protein [Arabidopsis thaliana]7814e-081
ACU13260 unknown [Glycine max]5852e-058

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q6NPM5 At5g622007974e-083
Q9LVB6 Similarity to embryo-specific protein 37974e-083
Q680D1 Putative uncharacterized protein At5g62200 (Fragment)7813e-081
C6SVI7 Putative uncharacterized protein5852e-058
C6SVB7 Putative uncharacterized protein5672e-056

Arabidopsis top hits (Blast detail)Scoree value
AT5G62200.1 embryo-specific protein-related7982e-085
AT2G41475.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Embryo-specific 3 (InterPro:IPR010417); BEST Arabidopsis thaliana protein match is: embryo-specific protein-related (TAIR:AT5G62200.1); Has 60 Blast hits to 60 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).4111e-040
AT5G62210.1 embryo-specific protein-related3762e-036
AT5G07190.1 ATS3 (ARABIDOPSIS THALIANA SEED GENE 3)3286e-031
AT5G07190.2 ATS3 (ARABIDOPSIS THALIANA SEED GENE 3)3035e-028

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  25%
 
71  13%
 
93  38%
 
82  25%

Unigene MembersMember information