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Information for unigene UN13902
| FASTA Sequence |
| Unigene ID: UN13902 | Length: 804 |
| SNP | AGATGCAGACATGACTCTTCTTATTGCAATCACATGTTCATATATGTATGATTTTATTCGATCAGATCATTTTACATTACTCTATC
AAATGTTCAGAGATGACACTTTTATTCGATCGGATCGTTTACATTATCGGCATTGCAACCATACGTTAACACAAATCTCCCACACA
TTGATTTACAACACGATCCTAGGAGAGACTCTTCCGGATCTCAGACCCGACCCTACCGATAGGAGAAACCTGGCAGTTGTTCCGCA
CGGCAGTGAGATTATACGGCGGCGTATCGGTCGCAAGCCATTGCTCCACATCAAAGTATTGATGTTCACTTTTTAAATGAACACTG
ACCGTCGTGACGTCCACGTAGTTAACAAACCAGGCCGGGTAAACGCCGGAGCCGTCTGAGGTCAGACTCAGTGAACAGACTGGGCT
CGGAAGACACTGCGCTTTACCACTGAAAATGTCCAAATTGCCTCTCTCGAAGTAGTCGTAACTTGGTCCCATTAACCCACCCCATG
TCACTATGTCTGGGATATCAATGTCCTGTCCCGAATTGTCGGAGATTTTAACGCTTATGATAGAATCTGTGCCGGCATTTTCCACC
GGTCCGGTTTCGATGTAGAATGTGTAGACGCAGTGTGGTTCACGGTCGGCGAATGCAACGACAGAAAGGGTGATGATGACGAGGAG
GGAGAGGAGGAGAACGTCACGGCCAGCCATAGTTGGTGATATGAATGTCCGAAAATGGACAACTAATATGTCCCACCTACTAATAT
AGTTTGAGACTTGGGAAGCGCAGATAAAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002880432 lipid-associated family protein [Arabidopsis lyrata subsp. lyrata] | 602 | 3e-060 |
| AAM62648 dehydration stress-induced protein [Arabidopsis thaliana] | 598 | 8e-060 |
| NP_565527 PLAT-plant-stress domain-containing protein [Arabidopsis thaliana] | 594 | 2e-059 |
| NP_195683 Lipase/lipooxygenase, PLAT/LH2 family protein [Arabidopsis thaliana] | 586 | 2e-058 |
| XP_002866880 lipid-associated family protein [Arabidopsis lyrata subsp. lyrata] | 578 | 2e-057 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8IVV2 Lipoxygenase homology domain-containing protein 1 | 124 | 3e-006 |
| C8YR32 Lipoxygenase homology domain-containing protein 1 | 121 | 7e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LEG8 Dehydration stress-induced protein | 598 | 5e-060 |
| Q9SIE7 Expressed protein | 594 | 2e-059 |
| O65660 AT4g39730/T19P19_120 | 586 | 1e-058 |
| Q9AXN5 Dehydration stress-induced protein | 572 | 5e-057 |
| A9PBQ7 Predicted protein | 470 | 4e-045 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G22170.1 lipid-associated family protein | 594 | 9e-062 |
| AT4G39730.1 lipid-associated family protein | 586 | 8e-061 |
| AT5G65158.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976); BEST Arabidopsis thaliana protein match is: lipid-associated family protein (TAIR:AT2G22170.1); Has 83 Blast hits to 83 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 315 | 2e-029 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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