 |
Information for unigene UN13909
| FASTA Sequence |
| Unigene ID: UN13909 | Length: 1379 |
SSR | | GGAACATTTAAATTTGCAGATTGATTAAGATTTAGTGTTAAGAATCAGAAAGAGAGTCAAGACTAGGAGTAATGAAACTGGTAGCA
ACAACTCAAAACTGATAACATTAAAACCAACTTAATGTTAAAACACAAACATGTATATATATGTGGTAGGCTGAGACCAGTATATT
GGAGTATCTAGTTCCTTCTAATGTTCTTTGACGGAACAAGTATTCCTCGCTTCTCCAAGCTCTTGAATCGATCTCTTGCAAGCGTG
CAACATGCCTTCAGCTTACGAAGTGAACCGGTCATCTCTTCTGTTAAGAGGACTTGCACAGGAGGAGCCTCGTACTTGTGCTTTCC
CCAAACGAGGAGGACGTATCTTCAACACTTCCTCCTTAGCAATGGTCTGTCTTATCTTTTTGTTCAGTTTCTCCTCATCTTCTTCA
GTTATTTCTTTTATGATTTTGGGCAAGCTGTCAATCTCCTTTGATAACTTCTCTTTATGCTTCTCCTTTGTCTCCTCTTCTCGTAG
CGCCTTTTGTCTAGCTCGCTTGTTCAACACCACACGTGTCACCCTCTTTGTGGTTCTTGCGGTTTTATTCCCAGCTTCAGACACTT
CATTTGCATCGTCAGCTTCCTCTTCTTCACCTTCGCTACCATTGTCCACACCAAGAAAGTAGGTACTCTTCCCATTGATTATTCTA
TTGCATACGCTCAAAAGACCTGCCTCGTCTTCGATGTTGTTGTTTCCATCGATAGTCAAAGGAACAGGCTCAGGTCCTAACTCAGT
TTTGTAAACTTTCTGCATTTCTTGAGCAACAGCTTCAGCCAACATATCCTCGTGACTTTCAGCTGTAGGGTTGTATGAGCATCCTG
CTGGATCAACTTCTACTGCCGGAATAGTCGAAGTCGTTTTCCATATCTTTCTAGGGTTGCTCTCATGTTCTCCTTTATGATCATCA
CCCCACAAGTCCATCATTACAGAATCACCATCCACATTATTTTGAGCTTGTTCAGGTGGTTTGCTTTCTACAGCGCTTGTCTTCTT
CTTCTTCTTCTTCTTACTGATCTTTGACTTGGGCTTGGAAGATGACACCACCTGGACAAAAGGATTCTTCTTCACAACGCTATCAC
ACCGAAGAACCTTCTCTCTGTTTTTCTCAATCTTCCGTTTCACCGGAATGTCATGAGATTTGTGGACGTGGAACAGATCCTCGCTC
GGAGCGGCGGAGAGGTTTCCACCGGAGAGAGCGTCTTTGGTGGATTTCTCGAAGAAATCTTCGATATCCTCCGTGCTTATGTTGGC
CCTCCATGCTTTCTTCCCTTTCCTTGAACTCTTTGACCCCTTACCCATCTCTCTCTCGCGGCGGCGGGAAGGTTTGCTTGCTTCAG
TCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002881721 hypothetical protein ARALYDRAFT_903334 [Arabidopsis lyrata subsp. lyrata] | 831 | 2e-086 |
| AAM64972 unknown [Arabidopsis thaliana] | 827 | 5e-086 |
| NP_565931 uncharacterized protein [Arabidopsis thaliana] | 819 | 4e-085 |
| NP_001078030 uncharacterized protein [Arabidopsis thaliana] | 819 | 4e-085 |
| NP_001189721 uncharacterized protein [Arabidopsis thaliana] | 819 | 4e-085 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O22892 Uncharacterized protein At2g40430 | 819 | 2e-086 |
| Q9UUI4 Uncharacterized protein C22F8.09 | 140 | 1e-007 |
| Q12080 Ribosome biogenesis protein NOP53 | 130 | 1e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LB48 Putative uncharacterized protein | 827 | 3e-086 |
| C6T7P0 Putative uncharacterized protein | 617 | 8e-062 |
| B9S4A4 Putative uncharacterized protein | 609 | 7e-061 |
| C6TLJ1 Putative uncharacterized protein | 596 | 2e-059 |
| B9HHX4 Predicted protein | 587 | 2e-058 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G40430.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tumor suppressor protein Gltscr2 (InterPro:IPR011211), P60-like (InterPro:IPR011687); Has 601 Blast hits to 544 proteins in 148 species: Archae - 0; Bacteria - 22; Metazoa - 201; Fungi - 103; Plants - 32; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink). | 819 | 2e-087 |
| AT2G40430.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tumor suppressor protein Gltscr2 (InterPro:IPR011211), P60-like (InterPro:IPR011687); Has 608 Blast hits to 551 proteins in 148 species: Archae - 0; Bacteria - 22; Metazoa - 203; Fungi - 106; Plants - 34; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink). | 819 | 2e-087 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
