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Information for unigene UN13932

FASTA Sequence
Unigene ID: UN13932Length: 872  SNP
ATGTGAACTCTGTAGGGTACGTCATACGCTCACAGGCCACACGGATAAAGTATGTGCTGTTGATGTGAGCAAGTTCTCGAGCAGAC
ATGTTGTCAGTGCAGCTTATGACCGTACTATTAAACTCTGGGATTTGCAGAAAGGTTACTGTACTAACACCGTACTCTTTACTAGT
AACTGCAACGCGATCTGCCTCAGCATAGATGGCCTCACGGTGTTCTCTGGCCACATGGATGGGAATCTTAGGTTATGGGATATTCA
AACTGGGAAACTTCTGTCTGAAGTAGCTGGACACTCTTCTGCTGTGACCTCTGTATCCTTGTCCCGGAATGGAAATATGATCTTGA
CGAGCGGGAGAGACAACGTGCATAACGTATTCGATACACGGACTTTGGAAATTTGCGGGACGTTGAGAGCATCAGGGAACAGATTG
GCATCGAATTGGAGCCGGTCGTGTATAAGTCCGGATGATGAATACGTGGCTGCGGGATCTGCGGACGGAACGGTGCATGTCTGGTC
TATATCGAAAGGCAATATAGTGACCACTCTCAAGGAGCAAACATCTCCTATACTGTGTTGTTCTTGGAGTGGGATCGGTAAACCAT
TGGCATCGGCTGATAAAAACGGGTATGTCTGTACCTGGACATAATTGTTTGATTACTCAATACGTCTATGTTTCAAAGGGTGTCTT
TATACTCTGGTCTGGTCGTGTTAGTTTGATGAAGTGTTTTTGTATATAATTGGTTTTTTTAAATGTTCATTTGCTTCAAAAAGATA
TACAAATAAACACCCAATGCAAGTTTGCAGGGCTTTACGCTCAAACGTATTCGATAATGCGAATTTAGACTGTCTACGTCCACACC
GGTTTTCGTTTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002865779 nucleotide binding protein [Arabidopsis lyrata subsp. lyrata]10916e-117
BAB09394 unnamed protein product [Arabidopsis thaliana]10872e-116
NP_199834 transducin/WD40 domain-containing protein [Arabidopsis thaliana]10872e-116
XP_002321652 predicted protein [Populus trichocarpa]9545e-101
XP_002511279 Protein tipD, putative [Ricinus communis]9341e-098

Swiss-Prot top hits (Blast detail)Scoree value
O15736 Protein tipD4041e-038
Q676U5 Autophagy-related protein 16-13556e-033
Q8C0J2 Autophagy-related protein 16-13521e-032
Q5RAC9 Autophagy-related protein 16-13431e-031
Q5I0B9 Autophagy-related protein 163403e-031

TrEMBL top hits (Blast detail)Scoree value
Q6NNP0 At5g5023010871e-116
Q9FGS2 Genomic DNA, chromosome 5, TAC clone:K6A1210871e-116
B9IF20 Predicted protein9543e-101
B9RAQ4 Protein tipD, putative9347e-099
A9RG98 Predicted protein6882e-070

Arabidopsis top hits (Blast detail)Scoree value
AT5G50230.1 nucleotide binding10885e-119
AT1G18080.1 ATARCA; nucleotide binding2159e-018
AT1G48630.1 RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B); nucleotide binding1997e-016
AT3G18130.1 RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C); nucleotide binding1916e-015
AT5G23430.1 transducin family protein / WD-40 repeat family protein1772e-013

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
123  38%
 
113  38%
 
71  13%
 
81  13%

Unigene MembersMember information