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Information for unigene UN13932
FASTA Sequence |
Unigene ID: UN13932 | Length: 872 |
| SNP | ATGTGAACTCTGTAGGGTACGTCATACGCTCACAGGCCACACGGATAAAGTATGTGCTGTTGATGTGAGCAAGTTCTCGAGCAGAC
ATGTTGTCAGTGCAGCTTATGACCGTACTATTAAACTCTGGGATTTGCAGAAAGGTTACTGTACTAACACCGTACTCTTTACTAGT
AACTGCAACGCGATCTGCCTCAGCATAGATGGCCTCACGGTGTTCTCTGGCCACATGGATGGGAATCTTAGGTTATGGGATATTCA
AACTGGGAAACTTCTGTCTGAAGTAGCTGGACACTCTTCTGCTGTGACCTCTGTATCCTTGTCCCGGAATGGAAATATGATCTTGA
CGAGCGGGAGAGACAACGTGCATAACGTATTCGATACACGGACTTTGGAAATTTGCGGGACGTTGAGAGCATCAGGGAACAGATTG
GCATCGAATTGGAGCCGGTCGTGTATAAGTCCGGATGATGAATACGTGGCTGCGGGATCTGCGGACGGAACGGTGCATGTCTGGTC
TATATCGAAAGGCAATATAGTGACCACTCTCAAGGAGCAAACATCTCCTATACTGTGTTGTTCTTGGAGTGGGATCGGTAAACCAT
TGGCATCGGCTGATAAAAACGGGTATGTCTGTACCTGGACATAATTGTTTGATTACTCAATACGTCTATGTTTCAAAGGGTGTCTT
TATACTCTGGTCTGGTCGTGTTAGTTTGATGAAGTGTTTTTGTATATAATTGGTTTTTTTAAATGTTCATTTGCTTCAAAAAGATA
TACAAATAAACACCCAATGCAAGTTTGCAGGGCTTTACGCTCAAACGTATTCGATAATGCGAATTTAGACTGTCTACGTCCACACC
GGTTTTCGTTTC
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GenBank top hits (Blast detail) | Score | e value |
XP_002865779 nucleotide binding protein [Arabidopsis lyrata subsp. lyrata] | 1091 | 6e-117 |
BAB09394 unnamed protein product [Arabidopsis thaliana] | 1087 | 2e-116 |
NP_199834 transducin/WD40 domain-containing protein [Arabidopsis thaliana] | 1087 | 2e-116 |
XP_002321652 predicted protein [Populus trichocarpa] | 954 | 5e-101 |
XP_002511279 Protein tipD, putative [Ricinus communis] | 934 | 1e-098 |
Swiss-Prot top hits (Blast detail) | Score | e value |
O15736 Protein tipD | 404 | 1e-038 |
Q676U5 Autophagy-related protein 16-1 | 355 | 6e-033 |
Q8C0J2 Autophagy-related protein 16-1 | 352 | 1e-032 |
Q5RAC9 Autophagy-related protein 16-1 | 343 | 1e-031 |
Q5I0B9 Autophagy-related protein 16 | 340 | 3e-031 |
TrEMBL top hits (Blast detail) | Score | e value |
Q6NNP0 At5g50230 | 1087 | 1e-116 |
Q9FGS2 Genomic DNA, chromosome 5, TAC clone:K6A12 | 1087 | 1e-116 |
B9IF20 Predicted protein | 954 | 3e-101 |
B9RAQ4 Protein tipD, putative | 934 | 7e-099 |
A9RG98 Predicted protein | 688 | 2e-070 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT5G50230.1 nucleotide binding | 1088 | 5e-119 |
AT1G18080.1 ATARCA; nucleotide binding | 215 | 9e-018 |
AT1G48630.1 RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B); nucleotide binding | 199 | 7e-016 |
AT3G18130.1 RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C); nucleotide binding | 191 | 6e-015 |
AT5G23430.1 transducin family protein / WD-40 repeat family protein | 177 | 2e-013 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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