RadishBase

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Information for unigene UN13941

FASTA Sequence

Unigene ID: UN13941	Length: 1074	SSR	SNP
GGGTAAACACGTAAGAGTATAGATTCAACCTCGTGTGTATAAAACAAAGTCTTCCTCATCTCATTTCCAATGTAGCTTACCCAAAT ACAAGAAGATAAACCAATGTCTTCCATGTGAATCCTTCCTTCCTCGATTCTCAGCTTCTGGCTTCTTTCTTTGTGTTGTAAAAAAG GAATCTTCCAAAAACGATGTCGCTTTTGTCGAAGCTACGGTGTATAACAGTAGATGTAACTGGTACGCTCATAGCTTACAAAGGGG AGCTTGGTGATTACTACTGTATGGCTGCTAAAGCCGTTGGCTTGCCTTGTCCTGATTACACACGAGTCCACGAAGGTTTCAAAATT GCTTACACAGACATGGCTCAGAAGTATCCTTGTTTCGGTTTCTCCAAAATGTCAAACATTGTTTGGTGGAAAACCTGCGTGAGAGA TTCATTTGTCAAGGCAGGGTATGACTATGATGAGGAACTTTTGAGAAAGTGTTTAGAAGAATCTATTCGACGTTTGGTTCTGCTGC ACCTTACTCTGTCTTTCAAGACTCTCGACCTTTCTTGAGATGGGCACACGAGAAAGGGCTTATCGTTGGACTTGTTAGCAACGCCG AGTATCGTTATCAAGAAGTTATTTTACCTGCCTTAGGTTTGAACAAGGGAGAGTGGGACTTTGGTGTGTTCTCTGGTATGGAAGGG GTAGAGAAGCCAGATCCAAGGATATACAAGCTGGCTTTAGAGAGAGCGGGGAACAACATTGCGCCTGGAGAGGTTCTGCACATTGG AGACAGTATGCGTAAAGATTATGTCCCGGCAAAGAGTATTGGGATGCATGCTTTGTTGCTTGATAGGTTTAATACAGAAGCTGCTA AAGACTGGAGAGAAGCTGGAGCTGTTGTGCTTCCTGATTTAGTTGCTGTTCAACAGCTTTTGGAGTCTGATAAGTTGAAATGTTAA TGGAAAGAGACCTCTCTCTAATGTATTGTAGTATTGCACATTTTGGCTCTTTCTTCTTCTTCTTCTTATGAGTAAAAAGAGTTTCA AAGGCCTATGATTTAATCTAAGTCCAACAAGGTGAAGTTTAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_199286 haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana]	751	2e-077
XP_002863548 hypothetical protein ARALYDRAFT_494510 [Arabidopsis lyrata subsp. lyrata]	751	2e-077
XP_002528147 rhythmically-expressed protein 2 protein, putative [Ricinus communis]	647	3e-065
XP_002273965 PREDICTED: similar to Os06g0665100 isoform 2 [Vitis vinifera]	632	1e-063
XP_002438809 hypothetical protein SORBIDRAFT_10g026570 [Sorghum bicolor]	625	9e-063

Swiss-Prot top hits (Blast detail)	Score	e value
Q5E9D6 Haloacid dehalogenase-like hydrolase domain-containing protein 3	176	5e-012
Q9CYW4 Haloacid dehalogenase-like hydrolase domain-containing protein 3	171	2e-011
Q94915 Rhythmically expressed gene 2 protein	134	3e-007

TrEMBL top hits (Blast detail)	Score	e value
O48587 At5g44730	751	2e-077
B9SQ78 Rhythmically-expressed protein 2 protein, putative	647	2e-065
C6TAQ9 Putative uncharacterized protein	627	4e-063
C5Z7M3 Putative uncharacterized protein Sb10g026570	625	6e-063
C0HJ94 Putative uncharacterized protein	622	1e-062

Arabidopsis top hits (Blast detail)	Score	e value
AT5G44730.2 haloacid dehalogenase-like hydrolase family protein	752	7e-080
AT5G44730.1 haloacid dehalogenase-like hydrolase family protein	752	7e-080

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	6			40%


6	9			60%

Unigene Members	Member information