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Information for unigene UN13949

FASTA Sequence
Unigene ID: UN13949Length: 2998 SSR 
GGGTAGTAGCCACTCCAACTTTTCCGCCGTCGTCGTCGTCGTCGGAGAATACATCAGAAGGAAGGTTGAGGGAGATGGAGAAAGTA
AAGATTGAAGAAATACAGTCCACCGCTAAGAAACAGCGGATTGCTACTCACACTCATATCAAAGGCCTCGGCCTCGAGCCAACCGG
GATTCCTATACCCTTGGCGGCTGGATTTGTCGGTCAACTCGAGGCTAGAGAGGCAGCTGGTCTTGTTGTCGACATGATCAAACAGA
AGAAAATGGCTGGCAAGGCTCTTTTGCTCGCTGGACCTCCCGGAACCGGGAAAACTGCTCTGGCTCTTGGAATATCCCAAGAGCTG
GGAAGTAAGATTCCCTTTTGTCCAATGGTTGGATCTGAGGTTTACTCATCAGAGGTTAAGAAAACTGAGGTTCTCATGGAGAATTT
TAGACGTGCCATTGGTCTACGTATCAAGGAAACCAAAGACGTCTACTAAGGAGAGGTTACGGAGCTGTCACCAGAAGAAACTGAAA
GTCTTACCGGAGGTTATGGCAAAAGCATCAGTCATGTTATCATTGGACTCAAGACAGTCAAAGGAACCAAACAACTTAAGTTGGAT
CCCACTATCTACGATGCCTTGATTAAGGAAAAAGTAGCTGTGGGGGATGTTATATACATTGAAGCAAACAGTGGAGCTGTCAAGCG
GGTGGGTAGAAGCGATGCTTTTGCCACTGAATTCGATCTAGAAGCAGAAGAATATGTTCCACTTCCCAAGGGAGAGGTTCACAAAA
AGAAAGAGATAGTGCAGGATGTGACGCTTCAAGATCTGGATGCAGCAAATGCTCGGCCTCAAGGTGGGCAGGATATACTTTCTTTG
ATGGGCCAAATGATGAAACCCCGGAAGACTGAGATCACTGATAAGCTGCGCCAAGAAATTAACAAGGTTGTTAACCGTTATATAGA
TGAAGGTGTTGCAGAGCTCGTTCCCGGAGTTCTATTTATCGATGAGGTTCATATGCTTGATATGGAGTGCTTTTCTTACTTAAACC
GTGCGCTGGAGAGCTCTTTATCTCCAATAGTGATATTTGCAACAAATAGAGGAGTCTGCAACGTTAGAGGGACTGATATGCCTAGT
CCACATGGAGTCCCTATTGACTTGTTGGATCGGTTGGTCATTATCAGGACTCAAATCTATAATCCCTCTGAAATGATACAGATTAT
AGCCATTCGTGCGCAAGTAGAAGAGCTAACGGTGGATGAAGAATGCTTGGTCCTACTTGGGGACATTGGGCAAAGAACATCTCTAA
GACACGCTGTTCAGCTGTTGTCTCCTGCCAGCATCGTGGCGAAAATGAATGGACGTGACAACATCTGCAAGGCTGATATAGAGGAA
GTAACATCACTCTACCTTGACGCCAAATCTTCAGCAAAGCTTTTACACGAGCAACAAGAAAAATACATCTCATGAGAAACCGTAAT
CGAATGTCTTATCAAAAGATTTGCATGTGTGCTCTGGTTGCTTCTCTTTCTAGCTATTTTGTAATGCATGTGACGATGGAGAAATC
TTAAATTTGATGGGAGAGAATTGGCTTCTCTGAGACCAGAGTGGTGGTGATTCGGATGTATCTTCAGTGTAAGCCTTGGTTATTTA
CCTACATTAGTTGATCTTTGAGTTTCCTGGTTCCATAATAGATCTAGACCAATTCTTCAAGAACAAACAACTTGTAAAAAAGTCTA
TTATCAAAAGATATTACTGGGAACTGGAGTGCAGTGTGAGGGTCTCTTTGATTCCTACGGTAATATCTGTAACAGAACGCTTTTGG
ATCTGATAATGATTTCAAGTTACAAGTCTTGACGTAAGTAGTGTTATTAAATATTATACATAAACTCCAATAAGTCTTTTGACGTC
GAACGTTGGTCTCTCTCACTTTTTGACGGTCTCATCTTTGGTTGCCTCGGACGTGAAACTGACCGCTTTTCTCGGATGCTCCCTTA
TGTTCAAGCTAAACACTTCAGGCCTCGAGTAATGACCCACCACATCGAAGTCGAACTTAGCTCGTGCTATGTCCCCAAGATCTAGA
TCAGCTGAGATAAGAGCCTCTCCTTCATAGTTTGGTCCAGCTAGAACAATCCCTAAAGGGGAAATGATAGAGCTTCCACCGGCACA
GACAACAGAATCAGGTGTAAGGCTCTCTTCTGAACCGGAAAACGTGTATTCCGGTGGAGGAGGATAGTCTTTCCGGCGACAGAACT
GGTTAGATGATAAAACAAAACATCCACCTTCGAGAGCGATGTGAGTCATCGACGCTAGCCAAGTTTCTCTAGCGTCAGCAGTAGGT
GCACAATATATCTCAATGCCTTTGGCATACATTGCGGTTCTCAAAGAGGGCATCCTATTCTCCCAACAAATAGCAGCACCGATTTT
ACCAATAGGAGTATCGAAAACAGGGATGGTTGATCCATCTCCGAACCCCCAGATGCAACGTTCAAGAGCTGTAGGCATGAGTTTCC
TGTGCTTACCCAAGAACTGACCTTGCGAGTCAAAGAAAAGGACAGAACAGTATAGAGTATAGCCTTCCCTCTCTATCACACCCATG
ACCAAGAACACTTTGTACTTCCTAGCCATCTCCGCCAAACGTTCCACTTCAGGGCCGGGAATATCAATGGCAGAAGCAAGATACTT
GCGAAAGTCGTCTCTTCCTTTAGCCGTCCGAGCACCAATGGCCAGCTCGAAGCTTGAGCCGCGAGGATATCCGCCGATGAACGCCT
CCGGGAACACAACGAGCTGTGACCCATTATCCGCCGCCTCGGCAAGTAACCTCTCCGCCTTGTCTAGGGTGGCGGGAGTATCGTAG
AAGATGGTGCATGCCTGGACGACGGTTGCTCGTACGATGGAGGAGGAGGAGGAGTCGCCGGACATGTCGATCTCGGGGAAGGATTG
ATCGACGTTGATTGGAGGAGTGGCCGTGACGAGAGACATATCTTGGTGAGTGGACATGGAAGGAAGGAGCTTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002874064 ATTIP49A/RIN1 [Arabidopsis lyrata subsp. lyrata]22544e-251
NP_197625 RuvB-like protein 1 [Arabidopsis thaliana]22455e-250
XP_002523847 DNA helicase, putative [Ricinus communis]21416e-238
CAB76908 putative Ruv DNA-helicase [Cicer arietinum]21112e-234
XP_002285127 PREDICTED: hypothetical protein [Vitis vinifera]20807e-231

Swiss-Prot top hits (Blast detail)Scoree value
Q9DE26 RuvB-like 117561e-194
P60122 RuvB-like 117424e-193
P60123 RuvB-like 117424e-193
Q9Y265 RuvB-like 117416e-193
Q0IFL2 RuvB-like helicase 117201e-190

TrEMBL top hits (Blast detail)Scoree value
Q9FMR9 Putative Ruv DNA-helicase22453e-250
B9SCX8 DNA helicase, putative21414e-238
Q9M3Z6 Putative Ruv DNA-helicase21111e-234
B8B7Q1 Putative uncharacterized protein20106e-223
A2WWS5 Putative uncharacterized protein20062e-222

Arabidopsis top hits (Blast detail)Scoree value
AT5G22330.1 RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1); protein binding22461e-252
AT5G22300.1 NIT4 (NITRILASE 4); 3-cyanoalanine hydratase/ cyanoalanine nitrilase/ indole-3-acetonitrile nitrilase/ nitrilase/ nitrile hydratase16251e-180
AT3G44300.1 NIT2 (nitrilase 2); indole-3-acetonitrile nitrilase/ indole-3-acetonitrile nitrile hydratase/ nitrilase11932e-130
AT3G44320.1 NIT3 (NITRILASE 3); indole-3-acetonitrile nitrilase/ indole-3-acetonitrile nitrile hydratase/ nitrilase11743e-128
AT3G44310.1 NIT1; indole-3-acetonitrile nitrilase/ indole-3-acetonitrile nitrile hydratase/ nitrilase11708e-128

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  4%
 
99  39%
 
112  9%
 
62  9%
 
124  17%
 
82  9%
 
182  9%
 
211  4%

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